atp5mpl


Basic Information

Item Value
gene id atp5mpl
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7777597 ~ 7782008 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345535
TCCGCTCTTCTGTGCGTCTCCTGTCGCGAGCTAGCATTCAGATTGGACAGTGACCTTCTCCGGGTGATCCGCAGCACTTACAGTTTAGAGATGGCTGGAAGTCTTTTCGGAACCTGGTGGTCTAGAGTTGGCCCCTACTACACCAAGGCATACCAGGAGGTCTGGGTTGGCCTGGGAATCATGACTTACTTTTACTACAAAATCTCCTATGGAGGAAAGAAAGCAGTGAAGTCTAagTCTGACCACTCACACTGACCGGACCACCACACAATGTGATCATCCCCTGCTCCCGCTGTGTAAATCTCCCCCAGAAGAGCTTCACCAACGCCAGgatgtttatctgtttgtgaaattaataaatgctCTGTTTGGAATACCTGTAAAATCTGTGTGGTC
>XM_026944390.2
TGTACTAATAGACCGGAAGCCTAGTTTGCACTTCCGCTCTTCTGTGCGTCTCCTGTCGCGAGCTAGCATTCAGATTGGACAGTGACCTTCTCCGGGTGATCCGCAGCACTTACAGTTTAGAGATGGCTGGAAGTCTTTTCGGAACCTGGTGGTCTAGAGTTGGCCCCTACTACACCAAGGCATACCAGGAGGTCTGGGTTGGCCTGGGAATCATGACTTACTTTTACTACAAAATCTCCTATGGAGGAAAGAAAGCAGTGAAGTCTAagTCTGACCACTCACACTGACCGGACCACCACACAATGTGATCATCCCCTGCTCCCGCTGTGTAAATCTCCCCCAGAAGAGCTTCACCAACGCCAGgatgtttatctgtttgtgaaattaataaatgctCTGTTTGGAATACCTGTAAAA

Function

NR:

description
PREDICTED: 6.8 kDa mitochondrial proteolipid

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU345535 False 396 lncRNA 0.49 4 7777629 7782008
XM_026944390.2 True 417 mRNA 0.48 4 7777597 7781997

Neighbor

gene id symbol gene type direction distance location
rd3l LOC108257848 coding upstream 1236 7774492 ~ 7776361 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding upstream 9903 7724306 ~ 7767694 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding upstream 138493 7636185 ~ 7639104 (+)
six4b LOC108258176,LOC108434989 coding upstream 147675 7623221 ~ 7629922 (+)
trnac-gca_25 NA coding upstream 188158 7589368 ~ 7589439 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 3414 7785422 ~ 7832026 (+)
trnaa-cgc_5 NA coding downstream 101210 7883218 ~ 7883289 (+)
trnaa-cgc_6 NA coding downstream 102637 7884645 ~ 7884716 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding downstream 103785 7885793 ~ 7945812 (+)
trnaa-ugc_17 NA coding downstream 105520 7887528 ~ 7887599 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 109792 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 111588 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 162617 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 255474 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 256739 7489308 ~ 7520858 (+)
G291644 NA non-coding downstream 51322 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 163944 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 344013 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 527234 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 682829 8464837 ~ 8465037 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 757911 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1617557 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1975904 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2798197 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3167996 4601055 ~ 4609601 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 261378 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 706639 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1211505 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1292020 9074028 ~ 9179173 (+)
G293016 ileu other downstream 2121742 9903750 ~ 9950731 (+)

Expression


Co-expression Network