G291644


Basic Information

Item Value
gene id G291644
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7833330 ~ 7837080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345543
CCATGGGCCAAAGAGACTTTATTTCAGGTGTTAAAGAGCCATCCTCAAGACGCTGGAGGTACAAAATCCTTCGGACTGATGGAAGACTCGTCTAACTTTTAGTGTCACTAACATGGGCAGAGTGAGCTCCTTGATGTGATTAACATTACTGGTTTGGAGGAAAGGAGAGCTGCTGAAGGCAGGAGGAGGAGTCAATTTGGGATTATGATTGGGTCATAAAGCAGTGTTCACTTCTGCTCAGGCATCAGGTCATCGATTGACTGGCCAGCTTCCAGACACTTCTCCATTTCGATGAGAAGCTTGACACCATCTACAACCATCTGTACCAGCTCCACCTCAGAGAAGCCCAGCCGGTCAGCATTGGAGATGTCAAAGATGCCACCCACTGCAGCAGTGTCTACTCCACCTAGACAGGGGAACATGGATGATTGTTACCAGAGAACCACATGGTTTGGAAGCTTAACGTGGACACCACCACGCAGCCCTGTCCCCAGGTTAGAAGGGCAGGTGAGTATGTAGCCCAGGTGCTCACTCCACATGAATTCATGGTCCTTCTCTTTGAAGAGAGATTCAATCTACAAGACACACGCAACACCatgttttacaatttaaaataggCTTATCCACATTGCATCTCCAAGTTTATCCATCTTTAGTTGCACCAACCTTTGTGAGCCCTGTGCAGAAACGAGTAAAGACTTCCTTCATGTTGCCACCCTTCTGCATGGAGATGACACGGAGGTGGTCTTCTTCATTCACCCAGACCAGGAAGGTCTTGTCATCATTGTGCCGATCCCCCTGGCATCGGGCCAATCACGAGCCATCCCAGAGGCCAACAGCAGTGGGGACACTGGCTtgtcaaacaggaagtgatcatcaatcagctgctgctgctcctcctctgTCATGTTCTTCAGGGCATAgtattttcctttaaattcaCCGTCGAGACTACTCAAACCTGTATAGTGAAGCAACAAACAGCTGCCTAAGGCACCATTTCATTTATGATTCCATAAATAATGGATCACAAATGGCTCAAGATGGAAAGTATGATTATTTGGAAGCCATACACCGACCTTCAACAGCCAGATTTTCAATGGCACGCCTCTCACCACGGCTGCAGTGAGGGGGCAGGGAGAAGCCACGAATGCTCCTGCCAGTTCTTACTCTGGAGCTCAACACATAGTTGGGATCAAGGTCATCTCCACCCCTGAAGGTTGTCTGGGTTCAGGTCGGTCTTGTGCTTGTCTGTGGGCTTGTAGCCTCCATGGCGGTCTTCGATGACTGGGTCCAGAAGATCTTTAAACACCTCATATGTCTCCTCATCACCAGCAACACAGCCCACAGTCATGATGAATGGATGGCCTGGGTAAGCACCTTGGCCATGTGGTTGTTGTGCTGGCTGAGGTCGGGGTACTCCTGCTCGGCCGTGTAGTTCATCTTCATCTTGTTGTGGGTGTTGCCGAAAGGCATGGCTGCTCTGCGCTTTAGTCTACTTTCTTTGGGGGAAAATGAAAACAACGCTTCCTTTAGTCCACAAACAAGCACACCGACGCTGATTATGGTCTCCAGAAATAAGCGGCTTTGCCTGTTTTTATACGGCGCCGGAGCtttgctctgattggctgctatTTGAGTCCATTCACTCTATTGGAGCTCGAGCGCAGCATCCAGCGAGAGCGCGCGCGGATCACGTGACccccc
>TU345545
CCATGGGCCAAAGAGACTTTATTTCAGGTGTTAAAGAGCCATCCTCAAGACGCTGGAGGTACAAAATCCTTCGGACTGATGGAAGACTCGTCTAACTTTTAGTGTCACTAACATGGGCAGAGTGAGCTCCTTGATGTGATTAACATTACTGGTTTGGAGGAAAGGAGAGCTGCTGAAGGCAGGAGGAGGAGTCAATTTGGGATTATGATTGGGTCATAAAGCAGTGTTCACTTCTGCTCAGGCATCAGGTCATCGATTGACTGGCCAGCTTCCAGACACTTCTCCATTTCGATGAGAAGCTTGACACCATCTACAACCATCTGTACCAGCTCCACCTCAGAGAAGCCCAGCCGGTCAGCATTGGAGATGTCAAAGATGCCACCCACTGCAGCAGTGTCTACTCCACCTAGACAGGGGAACATGGATGATTGTTACCAGAGAACCACATGGTAGATACATTTTGGTTATTACATGGTACAAATCAAGTCTTCATAATTAACGCAGTGGAGGGAATCCCAAGGAATTCAGTTACAGTCGATTCGATTCGTGTTCAAGTCCTTCTTAAACTTAGAGTTTACAATTAACATTCAAGAGCATCACTTTGCAATTAGTGTACGTGTAGCTGCAGGTTGTATAACGTATTTGTATCTTGTACCTGTTCCACGTTTCTGAAGCCTCAGCTTCTTGAGGATCTCGCCAAACTTCTCATGTTTGCTCAGGTTTGGAAGCTTAACGTGGACACCACCACGCAGCCCTGTCCCCAGGTTAGAAGGGCAGGTGAGTATGTAGCCCAGGTGCTCACTCCACATGAATTCATGGTCCTTCTCTTTGAAGAGAGATTCAATCTACAAGACACACGCAACACCatgttttacaatttaaaataggCTTATCCACATTGCATCTCCAAGTTTATCCATCTTTAGTTGCACCAACCTTTGTGAGCCCTGTGCAGAAACGAGTAAAGACTTCCTTCATGTTGCCACCCTTCTGCATGGAGATGACACGGAGGTGGTCTTCTTCATTCACCCAGACCAGGAAGGTCTTGTCATCATTGTGCCTTAGGGAAGTAAAAAAACCAAGGTGTTTAGAAGTAATCATATCCCCAATTCAACCAGTCATTAATTGGATTGCAAGAATTAAAATATGATCAATATTTGCAATTGTCTACAAAATTCACTAATATAATTTAGTTCAATGCCAAGGAAACACCAAAAGCTCACTTACCAGATCCCCCTGGCATCGGGCCAATCACGAGCCATCCCAGAGGCCAACAGCAGTGGGGACACTGGCTtgtcaaacaggaagtgatcatcaatcagctgctgctgctcctcctctgTCATGTTCTTCAGGGCATAgtattttcctttaaattcaCCGTCGAGACTACTCAAACCTGTATAGTGAAGCAACAAACAGCTGCCTAAGGCACCATTTCATTTATGATTCCATAAATAATGGATCACAAATGGCTCAAGATGGAAAGTATGATTATTTGGAAGCCATACACCGACCTTCAACAGCCAGATTTTCAATGGCACGCCTCTCACCACGGCTGCAGTGAGGGGGCAGGGAGAAGCCACGAATGCTCCTGCCAGTTCTTACTCTGGAGCTCAACACATAGTTGGGATCAAGGTCATCTCCACCCCTGAAGGTTGTCTGGGTTCAGGTCGGTCTTGTGCTTGTCTGTGGGCTTGTAGCCTCCATGGCGGTCTTCGATGACTGGGTCCAGAAGATCTTTAAACACCTCATATGTCTCCTCATCACCAGCAACACAGCCCACAGTCATGATGAATGGATGGCCTGGGTAAGCACCTTGGCCATGTGGTTGTTGTGCTGGCTGAGGTCGGGGTACTCCTGCTCGGCCGTGTAGTTCATCTTCATCTTGTTGTGGGTGTTGCCGAAAGGCATGGCTGCTCTGCGCTTTAGTCTACTTTCTTTGGGGGAAAATGAAAACAACGCTTCCTTTAGTCCACAAACAAGCACACCGACGCTGATTATGGTCTCCAGAAATAAGCGGCTTTGCCTGTTTTTATACGGCGCCGGAGCtttgctctgattggctgctatTTGAGTCCATTCACTCTATTGGAGCTCGAGCGCAGCATCCAGCGAGAGCGCGCGCGGATCACGTGACccccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345543 False 1707 lncRNA 0.50 6 7833330 7837080
TU345545 True 2145 lncRNA 0.47 4 7833330 7837080

Neighbor

gene id symbol gene type direction distance location
ppp1r13bb ppp1r13b,LOC108434983 coding upstream 1304 7785422 ~ 7832026 (+)
rd3l LOC108257848 coding upstream 56969 7774492 ~ 7776361 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding upstream 65636 7724306 ~ 7767694 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding upstream 194226 7636185 ~ 7639104 (+)
six4b LOC108258176,LOC108434989 coding upstream 203408 7623221 ~ 7629922 (+)
trnaa-cgc_5 NA coding downstream 46138 7883218 ~ 7883289 (+)
trnaa-cgc_6 NA coding downstream 47565 7884645 ~ 7884716 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding downstream 48713 7885793 ~ 7945812 (+)
trnaa-ugc_17 NA coding downstream 50448 7887528 ~ 7887599 (+)
trnaa-ugc_18 NA coding downstream 50929 7888009 ~ 7888080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 165525 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 167321 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 218350 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 311207 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 312472 7489308 ~ 7520858 (+)
LOC117599748 NA non-coding downstream 108872 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 288941 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 472162 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 627757 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 633867 8470947 ~ 8473728 (+)
atp5mpl NA other upstream 51322 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 813644 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1673290 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2031637 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2853930 4941951 ~ 4979400 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 206306 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 651567 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1156433 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1236948 9074028 ~ 9179173 (+)
G293016 ileu other downstream 2066670 9903750 ~ 9950731 (+)

Expression


Co-expression Network