G291769


Basic Information

Item Value
gene id G291769
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8126021 ~ 8127898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345697
TGATTTCTAATTTCTAACTTTGCTAAGGTTATAGTGTtggaacaaaataaagaaactctGGGCTGagttttataataaatcaaCTGTATCAAATAACCCTACTTGCCCTTGCTGCAGCCAGAGGTGAGCAGCAAGACAATCAATACAGGAACTGTCTTCTTCTTCCAGTCAGGACGGCCCTGGGAGGAAACAACCAATAGCATTAGCTCTCCTGTTCTCGGCTGACTACACGCAGACCAATGGGATCTTCTGGTTTCTTGTGGCTTCATCCATTCTGAATGTTTCATGAGGATCTGTATGATGATGCTGAGAGTTTGTTATGGTTTTGTCTCATGAGCTGCCACTAATGGGATGCTTCTCTGGTGGAATAATGGCATCAGGTTTCACATCTCAGAGGGGAGGGTTGAGGCAGTGTAGGTGTTTCTAATACTGTAATTTGCTTCATTTATGGTAGTACATCTAAACGAAGAGCTGGGAGAATTAACATAGAATACAGCAGGGTAATAAAGCAGTGAATAGACAGCTGATGAATAGGTGCAATAGTGCGCTTTTCCGACACAGTTATTAGCATTATGGGCTTGTGCTTAGCATATAATAAGACAGAGCATCATTTACAATGGCGTACAGAATTATTTGCacttttcatattcatttaaaaaaatatgtaaaattgtaaaacagTAGGAGAAACTATCTTCATTCTAAAAACTAATTATTCATTGAATCGTATCTtctctcaaaaatatatatgacaaattaaataattaaataagtaatatttaaaatacatgcaaacaaatagttatttttgaaaacattttttttttttttttgctcagtcCTCAGGAACTCATTTAACCATATCCTGTTCTCCTGGGGTTTAAATATGAGGTTACACATGTGTAAAATCCCTTTGTTATCCATTACTGTGGggggaaaaaccaaagaactttcaacacaaaagtaactgatggttgttgacttgcacaagtaaagtattttttttttaagcacaagCAGTTCAAAATACCTTTAAGCACAATTATGTTGATAAAAAGAATCACATGTCTAAAACAGATAAGTTTGTCACCTGACCCCTTGAGCACACTTAATTAAAAATTagagattaaaaattaattgattCTTGTGGTTGTTTCAAAAGTTTCCAAATAAACTATTAGTTGCTACTTTTATAACAATGAGAAAGAAGCCTTTCCTGAGAGCTTGTTAAAAAagcaacatctgaaattcaccAAGCATCATTAGAACTACAGTTGGCATAGTGTCTTGTGGTCAAATCAgaccaaaatcaaactttttggTCATTCACACCAGGTTTGTTGGGAAACGAGGGCTACATACAAGGCACCAAAACATCCACTGTACAGTTTGGTGGCGGTTTAGCTATATTTTTTGGACTATTTTGTGGCTGGTGGTTCAGGGGCTCTAGACTAATGCAATCATTTATTCTGCTAAGTACCAGGgtatttcagcccaaaacctggttCCCTCTTCCCTCTGCCTTAGATAGCACTTTCAATAAGATGAGGACCAAACATActtttaaaatcacagaaatggttaaacaaacaaaatcagtgGTTTCCAATTGTCTCTGGCCTTGAaccctactgaaaacctgtCTGAATCAAAAGGGGAAGTCTGCATTCACAAATGTAGTATGAAgaagcttaaaatgttctgcatgagGAGTGCACCAAGTACACTGTACAAGTGTTTTCagccttgttagacattacaggaataGACTCAgtgttattctctccagggcaAAATTGGACCACttaaacaaatctttttttgtgtgtgtgtatgtttggaaaaaggaaaacctttaaataaaactatacaatgCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345697 True 1878 lncRNA 0.36 1 8126021 8127898

Neighbor

gene id symbol gene type direction distance location
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 358 8088687 ~ 8125663 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding upstream 180209 7885793 ~ 7945812 (+)
trnaa-cgc_7 NA coding upstream 237185 7888765 ~ 7888836 (+)
trnaa-ugc_18 NA coding upstream 237941 7888009 ~ 7888080 (+)
trnaa-ugc_17 NA coding upstream 238422 7887528 ~ 7887599 (+)
esr2a LOC108258142,LOC108412120 coding downstream 45264 8173162 ~ 8190581 (+)
LOC113545195 l3hypdh,LOC107684001 coding downstream 168716 8296614 ~ 8305599 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding downstream 318418 8446316 ~ 8459728 (+)
LOC113545337 LOC108257647 coding downstream 422044 8549942 ~ 8557745 (+)
wdcp wdcp coding downstream 472513 8600411 ~ 8605983 (+)
LOC117599748 NA non-coding upstream 177990 7945952 ~ 7948031 (+)
G291644 NA non-coding upstream 288941 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 458216 7666919 ~ 7667805 (+)
G291581 NA non-coding upstream 460012 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 511041 7610487 ~ 7614980 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 181344 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 336939 8464837 ~ 8465037 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 343049 8470947 ~ 8473728 (+)
G291996 NA non-coding downstream 382671 8510569 ~ 8510776 (+)
G292072 NA non-coding downstream 455052 8582950 ~ 8583477 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 51577 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 344013 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1106335 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1965981 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2324328 5735473 ~ 5801693 (+)
LOC113545369 NA other downstream 360749 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 865615 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 946130 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1775852 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 2031057 10158955 ~ 10170739 (+)

Expression


Co-expression Network