G291972


Basic Information

Item Value
gene id G291972
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8464837 ~ 8465037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345951
GGCACATCTGTAACACTGCAAACAAGCAATCAGCTCTCCCCTACTGCTTCTACTTCCCTTCTAACCACCAACgcacacattaacattaacacatggctaggcatgtgtgtgtgcacacatgccATGACCTTACCACAAAGTCATGTGACTTAgtattttgctataaaatacCCTCACCAGTGGATAGCTGTCCTTTTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345951 True 201 lncRNA 0.43 1 8464837 8465037

Neighbor

gene id symbol gene type direction distance location
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 5109 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 159238 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 274256 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 339174 8088687 ~ 8125663 (+)
trnaa-cgc_7 NA coding upstream 576001 7888765 ~ 7888836 (+)
LOC113545337 LOC108257647 coding downstream 84905 8549942 ~ 8557745 (+)
wdcp wdcp coding downstream 135374 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 171413 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 426631 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 475355 8940392 ~ 8947001 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 143378 8309242 ~ 8321459 (+)
G291769 NA non-coding upstream 336939 8126021 ~ 8127898 (+)
LOC117599748 NA non-coding upstream 516806 7945952 ~ 7948031 (+)
G291644 NA non-coding upstream 627757 7833330 ~ 7837080 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding upstream 797032 7666919 ~ 7667805 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding downstream 5910 8470947 ~ 8473728 (+)
G291996 NA non-coding downstream 45532 8510569 ~ 8510776 (+)
G292072 NA non-coding downstream 117913 8582950 ~ 8583477 (+)
G292074 NA non-coding downstream 119182 8584219 ~ 8585902 (+)
G292102 NA non-coding downstream 240017 8705054 ~ 8705244 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 390393 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 682829 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1445151 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2304797 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2663144 5735473 ~ 5801693 (+)
LOC113545369 NA other downstream 23610 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 528476 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 608991 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1438713 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1693918 10158955 ~ 10170739 (+)

Expression


Co-expression Network