G291976 (runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075)


Basic Information

Item Value
gene id G291976
gene name runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8470947 ~ 8473728 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345955
CATGATAGTCATTCCCTGTAGCCATTGTTTAATAATGAAGGAAGACACAACATTAAGGCCAGaaacatgataaataaaacacatttgtgCAAGTGAAGCAAAGCATGCAAGCTCCAAAGAGAAATTAGCTCATAAAACATCCACCCACCTGACATTCCCACCCCTTCTGGTAGCTTAACCAGGGAggataaatattttacaaaaaaaaggaaaatgaataatAAGCACAAATGCAGTGGGGGTATATTTTCCTCATACAATAACTATCTACACTCACAATATTGTAAACACTTTGTAAACAAATTTTTATCTCTGCTGACTCTCACAGATACTCAGGTCCATACAATGACATTTATTTGACAGAACTGAACATGACTCACCAGAGATAACAAATGGTGTAAAATGTATGTCTCAACGTTCCTGGACAAAAATGTAGCTGTAAACTCTAAATACAAACAAAGAGTCAAATTAGAACATTTTCTGCTAACATCAGTACAGTTAAGCCCATTAAATTGAGTGGCATGATGATACAATTGAACTGCATAAATGACTAAGTGCTTTTCTTATCTCTCTGAGAAAACTGATCATTAGAAGCATGCTTGATAGCATTCCAAGGCTCATAAATACATACATCTGAATTTAACACACAGGGTACCCATTacactgtttctctgtttttgtgCAGTGTATAATATAAGGCACTGGATAGTAAAGCAAATGAAAAGATGAGTCTAAATGTTGCTGGCATGACTGCACAGAACATTGCATGAAAGGTAAGCAAAACCCcacatattattaaaaaaaataataataaaatcccaGTCTGAAATAAGTGAAATGGGTGGGCTTGGTTGTCGTACcataaaattacacatttttaaacttcAACAAGTGCTATTTAAGCTTACAGTAATACATTTACCTTGCTTTTTTGTTACTAAAATCAGAATTAGTACCAAAGTGGATGTAGAGCTGATTCATAGATTCTAGTCTGGGACTTAATTTTAGTCTTGGATCAAGAGCCACAGAGGTTACTGGATTACTTTAATaactaaaacaaataacaatGTGCAACTATAATCTCCAGCAAAAATACAGATTAGCTAAAAATGTACCTAAATTGTACTCAGAATTCAGACATATCAAAAATCACTGATGTTTCATGGGGAGGATTTTAGCTGCCATTACACTGAGCAATACCATATTGAGGATAAATGGTATTTTCACATCGTGATATAGTGTGTGTGGCTTTCATTAGGCTCCAGTAAACTGATCCAGTCTTCAGGTGGGTGTATAGCAGGCCCCTCAATGTGCAGAGGCTTTGGAAGTTTTCCTGTTAAAGCCCTTATTTCTGTCCAAATGGACTGCAACTGTTTTCAGCTTACACTAGGTTTAACGCCAACAGATATATCTGAGCATGATGCATACAAATTGACAGAAGTTTGGTAATAATCAATAAACAGTTTCCAAGAGAATGTGGCCTTTTTGGTTTGCAGTCAAACATGAAATGGCACCAGAGCTTTATGTACTGAGCAATTAAGCAATAATTCAGACTGGCAAGACTATCTGCTATATAAGAATAGAACTTTTCATAATGTACTATATGCAGATATAGGAAACCTCAGTATACGCAGAagaaaaatacttaaaaaaatggCTTAAGGCACAGAAAATGTATCTTTAAATTACATCAATTTCATTATTAACTTGAACATAGATGCATTACAAAAATATTCCGTCTATGAATCAAGTTCAAAATACATTACTTAAGTTATGGCTTTATAACTTACAACTCAATATTTGTTCACCAAATATGCATAATTTAAATTacttaagttaaaaaaaagaaaaacaaatttggTTTGTAATATTCAATTGAAACCAACTGCTGCTCAGTGCTTTAAACTGCATGTAAAACCTAACGCATGTTAAGGCTAACTACCTTTTTTTGAAAGAGCTAACAAACCACTCATAGCTTTTTCTAACCATACTCATTTTATCTATAAGCTATTGGTTTCAGAGGAATGGATTTTGTATTACAGGTatacaaataacaataactgCCATgagagtttttatttaaatacttcCCTTTGAAGAACCTCGTTCCATAAATACTCCTCAAAAGTGACATTTTatgaagattaaaaataaacaaggcAAAAGAGAATGTCTCAGCAAGATAGGACAAGGGTCCTGGTACGGTTTGTGCTTTAAAACCATGTCTCTGGTTTGGAGTTCACCTGTCTGACAGGCACATggtcctgtttttttgtttgtttgtttgttttttttttctaattccaTCAATATGGCCGCCACACTCCTTCATCCATCCTCCCTGCTGGATTGAGCACAGTTGGAGAGTTGCTGTGGCTGCCGTCCTCCTCCACACCGCTCCCTCCATCAGCCTGCACGGGAAGACTGGCATTGACCAAGGAGGCACCTGTGGAGGCGCTAGTGCAGGTGGGCAGCATCCTGGAGGGTGAGCGGTCTCCCCCAGTTACCATAGAGAATTGGTAGGAGCCGGAGGAGGCCCCATAGTAGAGATAGGGGGTGCTGCTGCTCTGGAATGGTCCACTCTGGCTCTGAGTGGAGCCTGGGTATGGTGGGGGCAGGTATGTGTGGTAATGGGCACTGCCAAGCGACATGCCTGTGGTGACAGGGGTGGGCGTGTAGGTAAACGTTGCCGGGTAGTGCATCCGTGGGCTGGAGAATCGGCTCTCAGTGAGGGAGGAGAATCCGGGGAACTGGCGCTCAAACTGCCCAGGGAAAGGAGTCA

Function

symbol description
runx2b Enables DNA-binding transcription factor activity and vitamin D receptor binding activity. Acts upstream of or within chondrocyte differentiation; dorsal/ventral pattern formation; and positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including EVL; cranium; fin; osteoblast; and pharyngeal arch. Human ortholog(s) of this gene implicated in cleidocranial dysplasia and metaphyseal dysplasia-maxillary hypoplasia-brachydacty syndrome. Orthologous to human RUNX2 (RUNX family transcription factor 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345955 True 2782 lncRNA 0.38 1 8470947 8473728

Neighbor

gene id symbol gene type direction distance location
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 11219 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 165348 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 280366 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 345284 8088687 ~ 8125663 (+)
trnaa-cgc_7 NA coding upstream 582111 7888765 ~ 7888836 (+)
LOC113545337 LOC108257647 coding downstream 76214 8549942 ~ 8557745 (+)
wdcp wdcp coding downstream 126683 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 162722 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 417940 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 466664 8940392 ~ 8947001 (+)
G291972 NA non-coding upstream 5910 8464837 ~ 8465037 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 149488 8309242 ~ 8321459 (+)
G291769 NA non-coding upstream 343049 8126021 ~ 8127898 (+)
LOC117599748 NA non-coding upstream 522916 7945952 ~ 7948031 (+)
G291644 NA non-coding upstream 633867 7833330 ~ 7837080 (+)
G291996 NA non-coding downstream 36841 8510569 ~ 8510776 (+)
G292072 NA non-coding downstream 109222 8582950 ~ 8583477 (+)
G292074 NA non-coding downstream 110491 8584219 ~ 8585902 (+)
G292102 NA non-coding downstream 231326 8705054 ~ 8705244 (+)
G292654 NA non-coding downstream 934764 9408492 ~ 9408714 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 396503 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 688939 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1451261 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2310907 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2669254 5735473 ~ 5801693 (+)
LOC113545369 NA other downstream 14919 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 519785 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 600300 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1430022 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1685227 10158955 ~ 10170739 (+)

Expression


Co-expression Network