LOC113545369


Basic Information

Item Value
gene id LOC113545369
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8488647 ~ 8534500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345969
TGGAAGCAGGGTTTTTACCTTGAAAGCGACCGGCAGGGTTTTGTTGCAGCGCCAGTGAGAGGGCAGCACGGAGCAGAGGAAGTTGGGGCTGTCGGTGCGCACCAGCTCAGCGGGATGATCGGCGATGATTTCTGCCATGGAGCGGTTCTCCAGCGGCCGCAGCCTCGCGTCGTGTTGCCCGGTTCCAGCTCCTGCATTCCCGCCGCTCATGCTGTTAATCCCGCCGCTGCCTCCGCCTCCGCCGCTGCCTCCGCCgctgccgctgctgctgctgctcaccTCGTTGATCTTGGCCGGGAGCGGCTGCAGGCTGCTGGACGGAGGGCTGAAGCGCCGAGTCGCGCTCGCATCTACAGGAATGCGCATCACAAACACGCTCAGTTACACTCGAGGGTTGCGGGAGTAACAGGCTCAGAATGTCAGCCCAGGCTCCAAACTTCTACTGGTGCATACACAGATACAACAGTTTTC
>XR_003404603.2
GGGCTGAAGCGCCGAGTCGCGCTCGCATCTACAGGAATGCGCATCACAAACACGCTCAGTTACACTCGAGctgtgtcttgcagctggaacttcCTCCTCCTGTCCTGGACACAAAAACGGCTCCTCTGGTTTAGATTTGCCTCTAATCAGCAAAGTCCCATGGAATAGAACAGCAAAGgTTGTTTTACAGTAATAGTGCACTTGCCAGACCCTTTCAGTACCATAATGATGTCTTATTTATAAGTCACATCAGGAACAAACCACACTGAGTATCGGGAGACATCTCAGGTCCCGGGAATCattgaaaaaataaactgaaatacaGAATCCCACTGGAAAATAATGGAACagtctgaatgtgtgtacagGAAGGAAATTGTCCACACTATTACTTCCTGTTTAACATCCTTGGATTATAAACGAATA
>XR_004580077.1
GGGCTGAAGCGCCGAGTCGCGCTCGCATCTACAGGAATGCGCATCACAAACACGCTCAGTTACACTCGAGctgtgtcttgcagctggaacttcCTCCTCCTGTCCTGGACACAAAAACGGCTCCTCTGGTTTAGATTTGCCTCTAATCAGCAAAGTCCCATGGAATAGAACAGCAAAGgTTGTTTTACAGTAATAGTGCACTTGCCAGACCCTTTCAGTACCATAATGATGTCTTATTTATAAGTCACATCAGGAACAAACCACACTGATCATTTATTATTTGCTAGCATACCCATAACAACTCCTTTTTTGCATATCTAACTGAACAAACTGTTCAACAGAGTATCGGGAGACATCTCAGGTCCCGGGAATCattgaaaaaataaactgaaatacaGAATCCCACTGGAAAATAATGGAACagtctgaatgtgtgtacagGAAGGAAATTGTCCACACTATTACTTCCTGTTTAACATCCTTGGATTATAAACGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345969 False 471 TUCP 0.62 2 8488647 8509483
XR_003404603.2 False 426 lncRNA 0.44 4 8488969 8534500
XR_004580077.1 True 499 lncRNA 0.42 4 8488969 8534500

Neighbor

gene id symbol gene type direction distance location
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 28919 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 183048 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 298066 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 362984 8088687 ~ 8125663 (+)
brf1b brf1,brf1b,LOC107683968,LOC107718407,LOC107701485 coding upstream 542835 7885793 ~ 7945812 (+)
LOC113545337 LOC108257647 coding downstream 15442 8549942 ~ 8557745 (+)
wdcp wdcp coding downstream 65911 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 101950 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 357168 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 405892 8940392 ~ 8947001 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 14919 8470947 ~ 8473728 (+)
G291972 NA non-coding upstream 23610 8464837 ~ 8465037 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 167188 8309242 ~ 8321459 (+)
G291769 NA non-coding upstream 360749 8126021 ~ 8127898 (+)
LOC117599748 NA non-coding upstream 540616 7945952 ~ 7948031 (+)
G292072 NA non-coding downstream 48450 8582950 ~ 8583477 (+)
G292074 NA non-coding downstream 49719 8584219 ~ 8585902 (+)
G292102 NA non-coding downstream 170554 8705054 ~ 8705244 (+)
G292654 NA non-coding downstream 873992 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 880051 9414551 ~ 9415576 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 414203 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 706639 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1468961 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2328607 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 2686954 5735473 ~ 5801693 (+)
G292216 trmt6 other downstream 459013 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 539528 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1369250 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1624455 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 2146810 10681310 ~ 10682664 (+)

Expression


Co-expression Network