G292074


Basic Information

Item Value
gene id G292074
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8584219 ~ 8585902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346063
agTCGACAGATAAAATATTCAAAGAAGCCAAAGCATTCCATGATACAGTGTTCAGTTTGTTCCAGGCATAGGCAAGGTTTTGTGAACTCCTATGATACTTGCAGCAAATTTTATAAGggatacatataaaatattactaagtACAGCACAGATTATTGTTTCTTATGCATTTAGCTGGACAAAGTTATATCAAAAGTGGCAATGCAGACAGTGGTTGTTAATGCCCCTTAATATACAGAAGAGCAGAGCTGTCACTTCTATTACACCATGCTTCCACTTCAAATACAGTAAGGCAGTGGTTTCAATTCAAACATGTATGTTATGGTTATGCTGATTTAATAATTCTATGTAATGTTCAAACGAAATCGAATAGGACATTGCTTATGTGCAAACTAGAGCTGTagtgtttcacatgtttaaaAAGAGCTAGGTGAAATATGCAGCACAGGTTGGCAATGAAGACGAGGATATTCCGAGTGTGTAGTTTGAGACCCTAAATTCACGGGAAGCATTTCCATGGTGGGGCAGAGGGTTAGAGTTTCTTCCTTCTTAAGTGGAGGATTCACTCCAGCTTTAGCAGCTCCACATCGAATATGAGTGTGGCATTAGGAGGGATGACCCCAGGGTGCCCTGTGGCTCCGTATGCCATATCTGGAGTGCAGGTGATTTTTGCCCGCTGACCGAGGCTCCTGTGCAACACCTTCCTCCCAGCCCTTGATGACTTCCTGTCGGCCGATTTTGAATTTGAAGGGCTTGTTTCTGTCTCGTGAGGAATCAAACTTTTTTCCGTTCTGCAGCATTCCTGCAGATATGCAATAGAATAATTAGCAATAAATATATCATACACCTCTAAATACAATATGAATAGCAttctatatattatttacattaaaaatcagaataatGTTATTTGTAAGAAAGCACAAGAAAGCACTTAATCATTAAAACAGTCCTAAAAACTAAGTCGATGGATTTCACAAAAAATAGAACTGCACTAGCAAACTTCTAGGTTTCCTAGTGTGGtagcaaatatttatatttaatattaggtGTGAAACTATGGTTATTCATCATCATATGCCtaacacacatttgtcttttaCACTATTCTTCTAGATGTTTCTCTGTAACCTAGAGACAGGAGATAGAAGCATAGTATGAAAAAAAGAGCTGTTAAACAAAAACTGTTTTGGAGATTGCACTGAACATGCTGTCTAAGAGTCTTTTCTTCCCTCATGTGTTTCAGAACAAAGTTGGTTTGCTCATATGGTGTCATCCATTCATTTGTTATGGGTAAAATATGAAGGACATTCCACCACAGAATATTGCCTTTCTCAGTTGCCTTTGCCCCCCAAGTACTCAATGCATGAAGCAAACTGACTTCAAAACAAAGGAATGATCCAATAACACCCGACTGGCTCCAAGAAACAAAACATTCTCAGCTTATCTAACTCTCCAGTGGCCTTCCATCTCTCATGATCCAAATGAACAAAAGGAATGTGGAATGTGAAACACTGGCCTAATTCAGGAGATTATTCTGAGGTTTTATGTAGGCCACCTTGTGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346063 True 1568 lncRNA 0.39 2 8584219 8585902

Neighbor

gene id symbol gene type direction distance location
LOC113545337 LOC108257647 coding upstream 26474 8549942 ~ 8557745 (+)
clic5b clic5,LOC108258161,LOC105897798,LOC103355727,LOC108231874,LOC107678823 coding upstream 124491 8446316 ~ 8459728 (+)
LOC113545195 l3hypdh,LOC107684001 coding upstream 278620 8296614 ~ 8305599 (+)
esr2a LOC108258142,LOC108412120 coding upstream 393638 8173162 ~ 8190581 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239 coding upstream 458556 8088687 ~ 8125663 (+)
wdcp wdcp coding downstream 14509 8600411 ~ 8605983 (+)
atad2b atad2b,LOC107603081 coding downstream 50548 8636450 ~ 8704985 (+)
trnak-uuu_18 NA coding downstream 305766 8891668 ~ 8891740 (+)
gzf1 gzf1 coding downstream 354490 8940392 ~ 8947001 (+)
chgb LOC108258019 coding downstream 401330 8987232 ~ 8990529 (+)
G292072 NA non-coding upstream 742 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 73443 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 110491 8470947 ~ 8473728 (+)
G291972 NA non-coding upstream 119182 8464837 ~ 8465037 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding upstream 262760 8309242 ~ 8321459 (+)
G292102 NA non-coding downstream 119152 8705054 ~ 8705244 (+)
G292654 NA non-coding downstream 822590 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 828649 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 968535 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 1001798 9587700 ~ 9587903 (+)
LOC113545369 NA other upstream 49719 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 509775 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 802211 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1564533 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2424179 6135920 ~ 6160040 (+)
G292216 trmt6 other downstream 407611 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 488126 9074028 ~ 9179173 (+)
G293016 ileu other downstream 1317848 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1573053 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 2095408 10681310 ~ 10682664 (+)

Expression


Co-expression Network