G292216 (trmt6)


Basic Information

Item Value
gene id G292216
gene name trmt6
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8993513 ~ 8996996 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346212
gcagagagagtTAAAAATTACAGCTTGTTCATCAGGGATTGTAATGCAAAGGCAGTATGTTTCTTGGCATATAAAAAGCATCATTCGTACCTCTCTGTACTGGCAATACACAACAAATGGTCTGGATGGTGCCACAAATCTGAGTAAACCCAGCAGCACAGGACAAGGGTGGAAGCGGCTGGCGATCACTAACCCGTCTGCGTTTCGTCCCTCCAGCAGTGCAGCAGCGGCAGCCagcctcttcctcttctcctccatcCTCGCCCTCTTCTCCTGTGCCCTCTGCTCACgcagcttctctctctcctccatcttctTGGCCTCGGCTGGGTCTGTGCTCACCTCCATGCTCTGTGACTCAGAGCTGCGTGAGGAAGGTGCTGCAGGCTGTTCGTCTGACTGTCCGTTATTTGCAGAGTCTGTGTCTTTCTCATCAACGTTCAGTGTTCCTGACAGCAGTGCATTCACCTTACACAAAGGAAATTCATGTAGTGTATCATGGAAGTGTGAAGGGAAGCCAAAGCTCTCCATGCCTGCTCTGACCGGTCCACCACCTGGATACATCTGGATCACTGAGCCATGG

Function

symbol description
trmt6 Predicted to act upstream of or within tRNA methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Orthologous to human TRMT6 (tRNA methyltransferase 6 non-catalytic subunit).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346212 True 583 TUCP 0.52 3 8993513 8996996

Neighbor

gene id symbol gene type direction distance location
chgb LOC108258019 coding upstream 2984 8987232 ~ 8990529 (+)
gzf1 gzf1 coding upstream 46512 8940392 ~ 8947001 (+)
trnak-uuu_18 NA coding upstream 101773 8891668 ~ 8891740 (+)
atad2b atad2b,LOC107603081 coding upstream 288528 8636450 ~ 8704985 (+)
wdcp wdcp coding upstream 387530 8600411 ~ 8605983 (+)
bmp2b LOC108258023 coding downstream 40115 9037111 ~ 9041907 (+)
LOC113545235 plcb4,LOC108258041 coding downstream 186436 9183432 ~ 9255249 (+)
lamp5 lamp5,LOC107704368 coding downstream 261398 9258394 ~ 9264851 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding downstream 339796 9336792 ~ 9338360 (+)
LOC113545203 NA coding downstream 387885 9384881 ~ 9385795 (+)
G292102 NA non-coding upstream 288269 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 407611 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 410036 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 482737 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 519785 8470947 ~ 8473728 (+)
G292654 NA non-coding downstream 411496 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 417555 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 557441 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 590704 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 614992 9611988 ~ 9612612 (+)
LOC113545369 NA other upstream 459013 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 919069 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1211505 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1973827 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2833473 6135920 ~ 6160040 (+)
LOC113545247 plcb1,LOC108258091 other downstream 77032 9074028 ~ 9179173 (+)
G293016 ileu other downstream 906754 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1161959 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1684314 10681310 ~ 10682664 (+)
G293528 NA other downstream 2021410 11018406 ~ 11024973 (+)

Expression


Co-expression Network