G292654


Basic Information

Item Value
gene id G292654
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9408492 ~ 9408714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346720
CTCATATGTATGTTTATACGTTTACATGTGTGGTTGTGCTTTGGGTTTATAACCGATTGTTAATGTCACTAAGCTACTGATTACACATATGGCATGTTCATACGTGAAATGTTTATTCATAAGAAGTATGTGGTCACACCATAGGTGAAATACCAGAAGCAAATTTGTTTGTTAGAGTACATACAACACTGTCGtgctatttttctattttgctTAGTTTGTG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU346720 True 223 lncRNA 0.34 1 9408492 9408714

Neighbor

gene id symbol gene type direction distance location
LOC113545203 NA coding upstream 22697 9384881 ~ 9385795 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding upstream 70132 9336792 ~ 9338360 (+)
lamp5 lamp5,LOC107704368 coding upstream 143641 9258394 ~ 9264851 (+)
LOC113545235 plcb4,LOC108258041 coding upstream 153243 9183432 ~ 9255249 (+)
bmp2b LOC108258023 coding upstream 366585 9037111 ~ 9041907 (+)
LOC113545338 LOC108257621 coding downstream 10396 9419110 ~ 9424569 (+)
evlb evlb,LOC108258102,LOC108411639,LOC103359910 coding downstream 17731 9426445 ~ 9463533 (+)
yy1b yy1a,LOC108258103,LOC108411685,LOC107712210,LOC101066055 coding downstream 55267 9463981 ~ 9474164 (+)
entpd5b LOC108257529 coding downstream 86531 9495245 ~ 9505126 (+)
LOC113545265 c25h14orf37,LOC107717645,LOC107659812,LOC107574488,LOC107713862 coding downstream 133694 9542408 ~ 9551941 (+)
G292102 NA non-coding upstream 703248 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 822590 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 825015 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 897716 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 934764 8470947 ~ 8473728 (+)
G292643 NA non-coding downstream 5837 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 145723 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 178986 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 203274 9611988 ~ 9612612 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding downstream 204711 9613425 ~ 9616591 (+)
LOC113545247 plcb1,LOC108258091 other upstream 229319 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 411496 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 873992 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 1334048 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1626484 7777597 ~ 7782008 (+)
G293016 ileu other downstream 495036 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 750241 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1272596 10681310 ~ 10682664 (+)
G293528 NA other downstream 1609692 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 2152708 11561422 ~ 11579249 (+)

Expression


Co-expression Network