LOC117599798


Basic Information

Item Value
gene id LOC117599798
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10158955 ~ 10170739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347333
TGAGAAATGATATAAagtcacacacactgaagaacACACATGACATTTGATCAGAAACCGGATCACTTGTGCAGTGCAGGAGCCGCGATTTTGCAAAATGGACTCTGGTTCAGTGGCAAACAACTACTTTGCCCTTCAGCTGTTCAGCAAGATCAAGGAAGGCAACAAATCCAACAATGTCTTCTACTCTCCTCTCAGCATCTCTTCTGCCTTGGCCATGGTGTCTCTAGGAGCTGCAGGCAACACAGCAGCTCAGATGGCTGAGGTCTTGTGCTTCAACAAACCCAAACCAGTGAACCCTAAGTCTGTTCAACCTGTTGCAGTCAACAGACACAACAGACTCAGAAGTT
>XM_034313908.1
AGTGCAGGAGCCGCGGTAAGTGTACTGAAGTATTGCAGTGAGTATTCTGCAGTTATTGCGTTATCTCCAGCTGTCATTACACGGCTGTTTGTCAGGACGATAGTACATGCAGGTAGTTACCAAATTTTGCAAAATGGACTCTGGTTCAGTGGCAAACAACTACTTTGCCCTTCAGCTGTTCAGCAAGATCAAGGAAGGCAACAAATCCAACAATGTCTTCTACTCTCCTCTCAGCATCTCTTCTGCCTTGGCCATGGTGTCTCTAGGAGCTGCAGGCAACACAGCAGCTCAGATGGCTGAGGTCTTGTGCTTCAACAAACCCAAACCAGTGAACCCTAAGTCTGTTCAACCTGTTGCAGTCAACAGACACAACAGACTCAGAATCCAGGTGAAGGCAGAGGCAGGCTCAGGGGGTGAGGGAGAGCCCACTGAGCATCAGGAGCCAAATCAGACAGGTACAGATAGTTACGCGTTCGCGCACTACACATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347333 False 350 TUCP 0.47 3 10158955 10161751
XM_034313908.1 True 490 mRNA 0.49 5 10159027 10170739

Neighbor

gene id symbol gene type direction distance location
LOC113545207 LOC108257895 coding upstream 18619 10136989 ~ 10140336 (+)
exoc2 exoc2,LOC107721345,LOC107711641,LOC107665386,LOC107659211 coding upstream 37655 10091369 ~ 10121300 (+)
gmds gmds,LOC107711642 coding upstream 133031 9945790 ~ 10025924 (+)
mylk4b mylk4,LOC108257896,LOC101163967,LOC103463388 coding upstream 217560 9917365 ~ 9941395 (+)
ypel5 ypel5,slc30a10,LOC107568027,LOC102210471,LOC102788175,LOC108441457,LOC103458748 coding upstream 486427 9667681 ~ 9672528 (+)
LOC117599727 LOC108261516,LOC108257915 coding downstream 53 10170792 ~ 10186791 (+)
katnbl1 katnbl1 coding downstream 195429 10366168 ~ 10374001 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948 coding downstream 203824 10374563 ~ 10378224 (+)
aven aven coding downstream 212925 10383664 ~ 10412148 (+)
fmn1 fmn1 coding downstream 332595 10503334 ~ 10527440 (+)
G293110 NA non-coding upstream 94944 10063765 ~ 10064011 (+)
G293095 LOC108257535,LOC107682698 non-coding upstream 120600 10036451 ~ 10038355 (+)
G292929 NA non-coding upstream 290346 9868149 ~ 9868609 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding upstream 542364 9613425 ~ 9616591 (+)
G292756 NA non-coding upstream 546343 9611988 ~ 9612612 (+)
LOC117599717 NA non-coding downstream 28110 10198849 ~ 10210998 (+)
G293350 NA non-coding downstream 366225 10536964 ~ 10537640 (+)
G293345 NA non-coding downstream 381502 10552241 ~ 10553007 (+)
G293380 NA non-coding downstream 390058 10560797 ~ 10561016 (+)
G293411 NA non-coding downstream 438887 10609626 ~ 10609846 (+)
G293016 ileu other upstream 208224 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 979782 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 1161959 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 1624455 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 2084511 8043386 ~ 8074444 (+)
LOC117599733 NA other downstream 510571 10681310 ~ 10682664 (+)
G293528 NA other downstream 847667 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 1390683 11561422 ~ 11579249 (+)
rps29 NA other downstream 1553242 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 3101343 13272082 ~ 13274243 (+)

Expression


Co-expression Network