G293345


Basic Information

Item Value
gene id G293345
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10552241 ~ 10553007 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347551
TGTCATATGTTTGTTTACTTATGAGTGAGAATAAACACACTCCAGTAAGTCCACATATGCATGAATATTAACATGAGTAAACAGCACTGCTTTATATGAGgaccaaataaaaataatctagtTCTCTACAGCTCTTGATACTGGATTATAAACGATCAAGTCGGTGCAGCAGAATAATTCTTAAAACAAGCTAAAAACAGTTTTGTCTGACATGTAACAAAGCATTCCCATAGAGCTTTCCCGCCAGATTCAGGAGTGGCtcttaaaaatctattttaaaaacccACATGGCCTTCTTAGCGATATTCCTGCCCATTTCACTACTTCATGAACTTGTTCATATCTTGTCATGTTGTTTAGTAAATGTGCATCTGCAGTAAACAGGCTTCATTCTGAAGCTTTTTGGCGCGGATTGCAACTAATAATATAACATCCATCATCCCATTTCTCTATTTATAAAGCTGTTGTCTACTGGGACAGGTGTTACTGTCAACAATAAAATACCGAAAGCATGACTTTTTGTATTGTTAGAAGCTGAATATGAAGTTATTGTCATTCGCGCGCTTAAAAAAAACTACGCAGTCACATAagggtgtgtgcatgtttacaataataaatgCAGTTATAGCTTAGTACCTTTTAAAACATCTAtcaaaaaatggttaaaataacTTATTACAGCATTAATGATCAAGTACACTGTGCTGTTTTGCATAATTTCAGTTATAACCTTAGGGTTATTTTCCTGCACCGACAATCATAAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347551 True 767 lncRNA 0.35 1 10552241 10553007

Neighbor

gene id symbol gene type direction distance location
fmn1 fmn1 coding upstream 24801 10503334 ~ 10527440 (+)
aven aven coding upstream 140093 10383664 ~ 10412148 (+)
emc7 emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948 coding upstream 174017 10374563 ~ 10378224 (+)
katnbl1 katnbl1 coding upstream 178240 10366168 ~ 10374001 (+)
LOC117599727 LOC108261516,LOC108257915 coding upstream 365450 10170792 ~ 10186791 (+)
ywhaqa ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 57120 10610127 ~ 10618262 (+)
adam17b LOC108257789,LOC108410928 coding downstream 66209 10619216 ~ 10636229 (+)
asap2b LOC108257785,LOC108410950 coding downstream 96118 10649125 ~ 10671634 (+)
mboat2b mboat2b,LOC108257786,LOC108410960,LOC103039741,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 130025 10683032 ~ 10718524 (+)
kidins220b LOC108258057,LOC108410983,LOC103040274 coding downstream 169387 10722394 ~ 10742331 (+)
G293350 NA non-coding upstream 14601 10536964 ~ 10537640 (+)
LOC117599717 NA non-coding upstream 341243 10198849 ~ 10210998 (+)
G293110 NA non-coding upstream 488230 10063765 ~ 10064011 (+)
G293095 LOC108257535,LOC107682698 non-coding upstream 513886 10036451 ~ 10038355 (+)
G292929 NA non-coding upstream 683632 9868149 ~ 9868609 (+)
G293380 NA non-coding downstream 7790 10560797 ~ 10561016 (+)
G293411 NA non-coding downstream 56619 10609626 ~ 10609846 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding downstream 90493 10643500 ~ 10644152 (+)
G293445 LOC108257787,LOC108410973 non-coding downstream 122673 10675680 ~ 10677135 (+)
G293546 NA non-coding downstream 509889 11062896 ~ 11137003 (+)
LOC117599798 NA other upstream 381502 10158955 ~ 10170739 (+)
G293016 ileu other upstream 601510 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1373068 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 1555245 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 2017741 8488647 ~ 8534500 (+)
LOC117599733 NA other downstream 128303 10681310 ~ 10682664 (+)
G293528 NA other downstream 465399 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 1008415 11561422 ~ 11579249 (+)
rps29 NA other downstream 1170974 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2719075 13272082 ~ 13274243 (+)

Expression


Co-expression Network