LOC117599733


Basic Information

Item Value
gene id LOC117599733
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10681310 ~ 10682664 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347680
CGACGAACTCCTGCTTGACAGTTATTAATCCACTGCTTAGTGCATTGAACCGGTGTGACTTTAATGTAGCTAGTCTTCATAAGGTAGAACTGTGTTACTTTAAGGTAGCTAGCCTTCATAAGGTAGAACTGTGTTACTTTAAGGTAGCTAGCCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGCCTTCATAAGGTACAACAGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACAGTGTGACTTTAAGGT
>XM_034313662.1
TGACAGTTATTAATCCACTGCTTAGTGCATTGAACCGGTGTGACTTTAATGTAGCTAGTCTTCATAAGGTAGAACTGTGTTACTTTAAGGTAGCTAGCCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGCCTTCATAAGGTACAACAGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACAGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTACAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTAGAATGGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGCCTTCATAAGGTAGAACTGTGTTACTTTAAGGTAGCTAGCCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGGTAGTCTTCTTAAAGTACAACGGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCTTATGGTACAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTACAACAGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCTTAAGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATATGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTAGAACAGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCTTAAAGTACAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCTTAAGGTAGAACGGTGTGACTTTAAGGTAGCTAGTCTTCATAAGGTACTTTATGAAgtacgtggtcttctgctattgtagcccatctgtctcaaagttcaatgtgttgtgcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347680 False 262 lncRNA 0.40 1 10681310 10681571
XM_034313662.1 True 1073 mRNA 0.40 4 10681325 10682664

Neighbor

gene id symbol gene type direction distance location
asap2b LOC108257785,LOC108410950 coding upstream 9676 10649125 ~ 10671634 (+)
adam17b LOC108257789,LOC108410928 coding upstream 45081 10619216 ~ 10636229 (+)
ywhaqa ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding upstream 63048 10610127 ~ 10618262 (+)
fmn1 fmn1 coding upstream 153870 10503334 ~ 10527440 (+)
aven aven coding upstream 269162 10383664 ~ 10412148 (+)
mboat2b mboat2b,LOC108257786,LOC108410960,LOC103039741,LOC107668249,LOC107601827,LOC107693237,LOC107756580,LOC106607658 coding downstream 368 10683032 ~ 10718524 (+)
kidins220b LOC108258057,LOC108410983,LOC103040274 coding downstream 39730 10722394 ~ 10742331 (+)
rnaseh1 rnaseh1,LOC107693208 coding downstream 345899 11028563 ~ 11034887 (+)
myt1la LOC108257609,LOC108411077 coding downstream 384800 11067464 ~ 11116680 (+)
cep43 fgfr1op coding downstream 437502 11120166 ~ 11138671 (+)
G293445 LOC108257787,LOC108410973 non-coding upstream 4175 10675680 ~ 10677135 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding upstream 37158 10643500 ~ 10644152 (+)
G293411 NA non-coding upstream 71464 10609626 ~ 10609846 (+)
G293380 NA non-coding upstream 120294 10560797 ~ 10561016 (+)
G293345 NA non-coding upstream 128303 10552241 ~ 10553007 (+)
G293546 NA non-coding downstream 380232 11062896 ~ 11137003 (+)
G293758 NA non-coding downstream 692140 11374804 ~ 11375264 (+)
G293817 NA non-coding downstream 800718 11483382 ~ 11483590 (+)
G293820 NA non-coding downstream 856862 11539526 ~ 11539953 (+)
G293864 LOC108257814 non-coding downstream 989819 11672483 ~ 11675661 (+)
LOC117599798 NA other upstream 510571 10158955 ~ 10170739 (+)
G293016 ileu other upstream 730579 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1502137 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 1684314 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 2146810 8488647 ~ 8534500 (+)
G293528 NA other downstream 335742 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 878758 11561422 ~ 11579249 (+)
rps29 NA other downstream 1041317 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2589418 13272082 ~ 13274243 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other downstream 2786063 13468727 ~ 13551228 (+)

Expression


Co-expression Network