G295590


Basic Information

Item Value
gene id G295590
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14237487 ~ 14237709 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350090
GAAATGACTTGGGAGTTGTAAATACATGAGTGAATTAGCATTTTCTAATTAGCATCTGAATGTGAATAAAGTCCAGATTATGCAGCCATAtatgttacataaaaatattgtgGTGCTATggccatgtgtgtttttaagcCTGCACCAAAATAGCATATAGTGTGGTCACATGgccattcaattttttttaaatgtaaagatgGAAAACAGCAGTGAAGAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350090 True 223 lncRNA 0.35 1 14237487 14237709

Neighbor

gene id symbol gene type direction distance location
LOC113531833 cldn20,LOC107560197,LOC107679668,LOC107555306,LOC107678665,LOC107742202 coding upstream 6770 14221122 ~ 14230717 (+)
LOC113532133 LOC108257866 coding upstream 18058 14195317 ~ 14219429 (+)
LOC113531931 LOC108257645 coding upstream 75764 14109393 ~ 14161723 (+)
LOC113531932 LOC108258045 coding upstream 130265 14105151 ~ 14107222 (+)
ndufaf7 ndufaf7 coding upstream 193793 14032442 ~ 14043694 (+)
zdhhc14 zdhhc14,LOC108258056,LOC108444016,LOC107747944,LOC107679689,LOC107560202,LOC107742328 coding downstream 73507 14311216 ~ 14342712 (+)
galca LOC108258153 coding downstream 119571 14357280 ~ 14367279 (+)
ak7a LOC108257562 coding downstream 129999 14367708 ~ 14376408 (+)
trnas-gcu_7 NA coding downstream 140314 14378023 ~ 14378104 (+)
trnas-gcu_8 NA coding downstream 141069 14378778 ~ 14378859 (+)
G295333 NA non-coding upstream 220861 14016393 ~ 14016626 (+)
G295315 NA non-coding upstream 342690 13894449 ~ 13894797 (+)
G295269 NA non-coding upstream 509629 13727579 ~ 13727858 (+)
G295222 NA non-coding upstream 561200 13676086 ~ 13676287 (+)
G294576 NA non-coding upstream 1613627 12623527 ~ 12623860 (+)
G295597 NA non-coding downstream 21827 14259536 ~ 14259990 (+)
trnas-gcu_19 NA non-coding downstream 159436 14397145 ~ 14397226 (+)
trnas-gcu_20 NA non-coding downstream 160142 14397851 ~ 14397932 (+)
trnas-gcu_21 NA non-coding downstream 161589 14399298 ~ 14399379 (+)
trnas-gcu_22 NA non-coding downstream 163685 14401394 ~ 14401475 (+)
LOC113532127 cebpzos other upstream 216737 14017524 ~ 14020750 (+)
trnaf-gaa_29 NA other upstream 682540 13554875 ~ 13554947 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other upstream 686259 13468727 ~ 13551228 (+)
LOC113532225 NA other upstream 963244 13272082 ~ 13274243 (+)
rps29 NA other upstream 2512155 11723981 ~ 11725332 (+)
arid1b arid1b,LOC108444017 other downstream 2810 14240519 ~ 14304691 (+)
trnas-gcu_11 NA other downstream 144829 14382538 ~ 14382752 (+)
trnas-gcu_13 NA other downstream 146597 14384306 ~ 14384387 (+)
trnas-gcu_14 NA other downstream 147715 14385424 ~ 14385505 (+)
trnas-gcu_16 NA other downstream 149767 14387476 ~ 14387557 (+)

Expression


Co-expression Network