G295766


Basic Information

Item Value
gene id G295766
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14556729 ~ 14574795 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350290
CAAAATTATGAACAGGtatagagacaaaaaaaaacatttggataGACTCACAATTTTATAATGGACTGCaaaatataaagattttttttgcatcatttcatAAAATGCCACTGGTATACAAATACACTGTGTATTTTAACAGTGAACGAAACATATACGAATATATCCATTGAAATTTATGGGGGGAAAGAAACCCTGcaccaaaaacaaaataaaatattaaacaaacaaacaaccaaccCTGCTATGGCATTCAAAATATGGTAGAAAAAACATGAGATTATTctcttttaaaacacatttacacaggaaTTCGTTATCCTTGTACttcaacactgtaaacattattttaaagacAGAGtgtcattttttctctttttttttttttgattttcttcCAAGCTGGTGAAGATCCAGCTGTATGTATCAGTGAAGAACTAGATGGCTTGGTTTTCTCGGACAAACTTGTGCGTTAAATTAGATTATGAAAGGTAGAACACATACGCACATCAAATGCATAAATACTTAACCTCTTCTTTGTGATTTCTTGTCGTTGGaatgaaattcatttttacaaatgtaCACACTGCATAATCATTTGCGTGCATGCTGGATTGAACGGCAGTAAAACACAAGCATGTGTATCTGGGCCAATTTGTCTCCATATCTTTACTAAAACTTTCTCTggtttacattttaattgtCTTTGCCATTCAAGCTACCTTGTTTTTAACTTATGCTACACAAAAGACGTATACAGAGTTGCACATGGTAAGCTAGGCTTAAAGATCAGGTAAGGAACACAGGAAATTTTTCTTATGGTATCTTTCGATGTCTTTACGAGATACCAActtgcaaacaaaaaaaaacacagcattttATTAAGTGCTGATTATAAGCTTAATTTGGAATGAAAAcagtactgaaaataaaatgtctagtcttaaaaaaaaagcagcaggcTGAAATTTCTAAGGTTTGAGGGGAGAATGGTCATTTGTTAAAGCCACAGCAGCCCTCTGAATGGGTGAAGTGTGAAAAATAGGAGGCCATGAGGCCTCCAACGTATAAATGAGCACACTGGTTCATTCCACAAAGCTCTGGAGATTAAGCAGCCACTTAGGATACTTGCATGTTGCCATAACAAACCAATTTTGATaacaattttgtaaataatatgtcTATAATACTGCAAGACCAGGTAAATGAATGGTCCTGGCTGAGGTtttgttaaaattgtttttaacaCTTTGGGCCCTAGTATGGAAATAACATCTCACAATTTTCATCAgctaaacatttcatttcaatcaGGATAAAATAAGCAAATTTGTATGTTTACTCTACTTTGAGGCCAAACCCATTAACATGTGTGTTAAGAAAATATACACTGGGTGgtatattttgttttacaatttGTGGTAATGTAAACATTGGGATCACAAAAATATGGGCTATATCACATTACCATCCTTATGAAGAATACAATAAATCAACAATGTCAAAATGAGTGTATTGTGGTAGGAAagaatttgttttgtttaagcTTGACAGCTGAAATGATAAAAGTCATATCAAGAACATATTCAGCTGGATGGTGGTCAAAAGGGAATCATTAAAATACAGTCAAACTGTCATCCAGCTGCCTGAGACATCCCTGGTATTCCATATCCCTcgaatttgtttaatatttattgtcAAGTTGACATTCAGTGctttatgttttaatatatcACCCACGTCTGGTGTGACTGCAAACAGCAGTAGTACACAAGAAAATCTTTCTTATTTTTAGAAGTACAACTTCTTCAGAATTTAGCAGGACAGGTTAAAGTTACTTCTTTTCCTTTCAGGAAATACCTCAAACAAAATGGTGGCAGAATGCCAAAATCTCAGTATGTGTCATATCGTAACATGGTGACTGAAAATAATATTCTAACAAAGGAATGCATTAAAACCCCTGCACATGCCATAATATACCTGCACATGCCATGTATCATCAAGAAATGATccaataaatacagaaattattGCACAGTAGAAAGGCTCCATGGACTCTTAATGGACAAATTCCTGGTGGTTGCTGGGAATGCCAGCAGGGCTTTTTTCAAatccatccacaaacatttactAACGTTCTTATTTCTCAGGTggcactagaaaaaaaaaaacacaaaaaaaggatAGAGGAAGACAACAAGAAACACAGTGACgcaaaattaaaggaaaaaaattttcTGGTGGaggaattaatttatttgaatgggaaaaacaaaaaacaaaaacacacaatatataaCTTAAAAAAGAATCCAGTCTAATTATTTTCACCTATTTTGCTTTGCATTTAATATGAACTTTAACCTTGCAAATTAGTGAAACGTGATAATAAAAGGGATAAGgctgtctgaattttttttttgtttgtttattttttaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350290 True 2443 lncRNA 0.33 2 14556729 14574795

Neighbor

gene id symbol gene type direction distance location
papola papola coding upstream 133557 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 176155 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 177870 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 178625 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 180321 14367708 ~ 14376408 (+)
reps1 reps1,LOC107727647 coding downstream 22396 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 70838 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 122486 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 263149 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 740258 15315053 ~ 15322483 (+)
trnas-gcu_22 NA non-coding upstream 155254 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 157350 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 158797 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 159503 14397145 ~ 14397226 (+)
G295597 NA non-coding upstream 296739 14259536 ~ 14259990 (+)
G295787 NA non-coding downstream 52307 14627102 ~ 14631160 (+)
G295818 NA non-coding downstream 89298 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 90737 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 143490 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 200928 14775723 ~ 14775932 (+)
trnas-gcu_16 NA other upstream 169172 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 171224 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 172342 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 173977 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 252038 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 548972 15123767 ~ 15189612 (+)
G296138 NA other downstream 648851 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1591603 16166398 ~ 16180232 (+)
G296562 NA other downstream 1739468 16314263 ~ 16315126 (+)
G296825 NA other downstream 2022355 16597150 ~ 16597787 (+)

Expression


Co-expression Network