G295787


Basic Information

Item Value
gene id G295787
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14627102 ~ 14631160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350316
CGAATGCAGCATGACCACTGTGGATTTCTGATCTTACCTGTCGACCCACCAGGCCGGAGCCGCTGCTGCAGGTGCGAGAGTAATATTTAATACAGGTGTTCTTCAGGCACGGCTTACACTCCTCCCACAGGGCCTGTGTGGTTTCGTTACACACTGACTGCTCCTCATTCAGCTTCTCTTCCATCTCCTGTGCAACCTTCAGAGCGTCCTAATGCACACAGGAAATCTGGAGGTCTAGCACACTTTCAAACTGTTACAGTCctcactgaggggaaaaaaaacagaatcagtCTGAAAATCTTCTCTAACCTCTTTCTGCTTCTTGGTTTCCTCCAGCGATGACAGGAACTTCGTGTGATCTTCCTCCGACTTCTCCATCACTGTCTTCATCTCCTTTACGCCATTAATGGCATTTTCGATCTCCTTATCCACATATTTCTCTCCGAGCTGGGAGATCTCTTTTAAGGTCGTCCTGGGAGGGGGGAAGCAGACACTCAGCGGAGATGTAGAGGAGCGAAAGGCCCACCAAAGACCAACACACCCTCATCTTCAGCGAGTTCAGCTTTCAGCTGCAAGAAACACACTAAAGcagaTGGCCTGGCCTGAGCTCAGAGGGATCGTTGGCGTCCTGACGAACCTGGAGTTGTGCTGCAGTGAGATGAGAGAGAGCAGTATGACATGAACTCGCTTTTTGGAGCTGAGAGTCAAATTCCCCTCTGCACTGAAAAATCAATACACATTCACCTCAGGAAGGGTGAGCGAGCAGACACACTATTTAACcctctgtgtgtgcagttacGCAATTGCACAACAATGCCAGAGTTAAAGATAAAGGTTATTtgataaacctgtgatttttaaaatatatgctttcatttcattctggGTATTACTACACCACATGGGATTAGTGATGTCCTGCAGTCTAGTTTTCATGTATTATAATAGCATTATGTGCAAgtatcagaataaaaaaacattttacctCCATATTGAAATATTCACTTTTACATGGATTTGGATTAAGAAAATGTtactattatactatactatactattatattatattataataaatactactactact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350316 True 1090 lncRNA 0.43 3 14627102 14631160

Neighbor

gene id symbol gene type direction distance location
reps1 reps1,LOC107727647 coding upstream 6204 14597191 ~ 14620898 (+)
papola papola coding upstream 203930 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 246528 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 248243 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 248998 14378023 ~ 14378104 (+)
scara3 scara3 coding downstream 14473 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 66121 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 206784 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 683893 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 705024 15336184 ~ 15336256 (+)
G295766 NA non-coding upstream 52307 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 225627 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 227723 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 229170 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 229876 14397145 ~ 14397226 (+)
G295818 NA non-coding downstream 32933 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 34372 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 87125 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 144563 14775723 ~ 14775932 (+)
G295917 NA non-coding downstream 211890 14843050 ~ 14870272 (+)
trnas-gcu_16 NA other upstream 239545 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 241597 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 242715 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 244350 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 322411 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 492607 15123767 ~ 15189612 (+)
G296138 NA other downstream 592486 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1535238 16166398 ~ 16180232 (+)
G296562 NA other downstream 1683103 16314263 ~ 16315126 (+)
G296825 NA other downstream 1965990 16597150 ~ 16597787 (+)

Expression


Co-expression Network