G295822


Basic Information

Item Value
gene id G295822
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14665532 ~ 14665767 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350359
AAGATATGGCAAGTGGTGCTGAGCAAGTTGTGAAAATACAAAAGAGACAATTGACCCCTAAGTGAGTAATGTAACTCTGACATCAGCCACGCCTCCTAGGTTTTATGAGCAAGCCAgaatttgttttgtaaaatgttgTGTTGTGATGTTGGGTGTCAGAATCACAAAAGAGTTCATAAACTGATTCATTTTTACCACATACTATCAAATCGGACACCTTTGCAAGCCCACAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350359 True 236 lncRNA 0.39 1 14665532 14665767

Neighbor

gene id symbol gene type direction distance location
scara3 scara3 coding upstream 5586 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 44634 14597191 ~ 14620898 (+)
papola papola coding upstream 242360 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 284958 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 286673 14378778 ~ 14378859 (+)
esco2 esco2 coding downstream 31514 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 172177 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 649286 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 670417 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 819324 15485091 ~ 15487397 (+)
G295818 NA non-coding upstream 1151 14664093 ~ 14664381 (+)
G295787 NA non-coding upstream 34372 14627102 ~ 14631160 (+)
G295766 NA non-coding upstream 90737 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 264057 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 266153 14399298 ~ 14399379 (+)
G295852 NA non-coding downstream 52518 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 109956 14775723 ~ 14775932 (+)
G295917 NA non-coding downstream 177283 14843050 ~ 14870272 (+)
G296181 NA non-coding downstream 639794 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 658082 15323849 ~ 15324587 (+)
trnas-gcu_16 NA other upstream 277975 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 280027 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 281145 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 282780 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 360841 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 458000 15123767 ~ 15189612 (+)
G296138 NA other downstream 557879 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1500631 16166398 ~ 16180232 (+)
G296562 NA other downstream 1648496 16314263 ~ 16315126 (+)
G296825 NA other downstream 1931383 16597150 ~ 16597787 (+)

Expression


Co-expression Network