G295852


Basic Information

Item Value
gene id G295852
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14718285 ~ 14719968 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350399
ACTTTCGAATAAACTGGTTTTCTGTTTCGTTTTCTCAGTACTGGGAAATGTGTTGGAAttattgtctgtggtaatcactcATACATACAGCTGTAGTGGATTGAGATGAGGGTGAAAAtgactggagtattcctttaaacaCCGAGCCAccactgctgatctcctgctgcCTGGAAGTcaattttctttccttctggGTTCAGTTTAGTATTTTATAGTCATTTTGGTGTTCACCTACAGGGACTACAtccactctgtgtgtgagtgttagatAAGAGGAAATTTAACCCCTTATACTTGTGTACATTTTCAAACCCCAAGCCTCGTTATCCAGGAACTGCtccaaaatgcaaaatgattaAGCTAATATTATAAgagtaaaaaggaaaagagtGAAACTTAAGTTCATTAAGTGTTAAAAGAAATCTGGGAAGCTTTCACATTCATATATGCACTCCTTTAATCACAAAGACATCCCTTTACACAGAACATCCTCGTATGAGTCAGAGATAGTAAAAGAATCGCAGTGCTCACGGTCTCAGAAGGTGGTCGCATCCCGGCGTGTCTTGACTCGGACCCCCCTCAACTACATAAACTGAGGTAATACATTCTCTAATGATGCTGACTTCAACATAAAGAATAAGAGGATGTCTTCTTGCCCCCGAGCGGATCTTTCAGAGTGAATCCAGATTGTTTTCATGTTCAGTGACCCTTATCACAGTCATCTGTGTGCAATTCAGGACTATTCATCAATGACAGCGTGAGCAGGGCAGCTGGCAGGGATCTCCAATAAACACTCTATCATTAACAGTGACATGAGCATTTCAAGCTTTCCATATAAAACTTGTTTGAGATTACTTTTACACAACACATGCAAATAATGACCATGGCTTCTTTTTTTGATATCGCATTTTCTCAGCTCGAACAGAACCCAGACCGGGGCAGACGATGCGTGCaggaaatacaaataaattctaaaaataaactAGATAGGAAATCAGATTCACAGATTCTGATTTGATTATCAGAAAATCTAAACTATTCTTTTCTTAATCACAATTTTCTCATTAAAAGAATGGTTTGGCAAAAcatcaaatttacacatttataccCCTTAAATATAGTCAGtgagccaagacatgtttgatgTGTGAAGTTTGCTTCCATAGTTTTGCACCATAGCTATGATTCTACtcacactcactttcagtaagcactttatcctgatcaggtctcagtggatccggagtctatcccaggaacagcgggtgtgaggtgggaacacACTCTGGATGCGCTACCAGTCAATCGCTGTtactaacaaaaaatataaatctcaCATAAATTCTTTTCAGCAAATCCGTACCCAAACCTTCATATACTGCCTCAAATGACATAAATaactgcttttttaaataaatgattttgttaaaaaagcagtctgtatttacaaatttaaattcAATGTAGAATTATATTATCATCCACATCACTTCCAGCTTTCTGCTACAATTCCTCCTTCAGACTTCGGGATCCTGAAATGATGCCAAACTGTTACTGATGCACCGAAATAAAAATCTTTGGttgaaacatacaaacaaacaaacaaacaaaaaaaggatttgtatttctatcatcatcattattattattaattctattTCTGTACTGTTGCATTaacata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350399 True 1684 lncRNA 0.37 1 14718285 14719968

Neighbor

gene id symbol gene type direction distance location
esco2 esco2 coding upstream 11257 14697281 ~ 14707028 (+)
scara3 scara3 coding upstream 58339 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 97387 14597191 ~ 14620898 (+)
papola papola coding upstream 295113 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 337711 14380493 ~ 14380574 (+)
hddc2 hddc2 coding downstream 117976 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 595085 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 616216 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 765123 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 786891 15506859 ~ 15557349 (+)
G295822 NA non-coding upstream 52518 14665532 ~ 14665767 (+)
G295818 NA non-coding upstream 53904 14664093 ~ 14664381 (+)
G295787 NA non-coding upstream 87125 14627102 ~ 14631160 (+)
G295766 NA non-coding upstream 143490 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 316810 14401394 ~ 14401475 (+)
G295896 NA non-coding downstream 55755 14775723 ~ 14775932 (+)
G295917 NA non-coding downstream 123082 14843050 ~ 14870272 (+)
G296181 NA non-coding downstream 585593 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 603881 15323849 ~ 15324587 (+)
G296240 NA non-coding downstream 674851 15394819 ~ 15395021 (+)
trnas-gcu_16 NA other upstream 330728 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 332780 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 333898 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 335533 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 413594 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 403799 15123767 ~ 15189612 (+)
G296138 NA other downstream 503678 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1446430 16166398 ~ 16180232 (+)
G296562 NA other downstream 1594295 16314263 ~ 16315126 (+)
G296825 NA other downstream 1877182 16597150 ~ 16597787 (+)

Expression


Co-expression Network