G296334


Basic Information

Item Value
gene id G296334
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15558629 ~ 15558848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350942
CCAGTATCTCACTGATGTCACAACAACTTCACTGGCACAGCTTCTTTTTTCATCTGCTTCTCTCAGCCATCTGTGAGTATCATATGTGATTTATTCCCATCAGTAATCCACCTCCAAACTCTTGCCGTGTgataagaaatgaataaaaactttaGGGCGCGCCTCTATAGGACAGTAATCAAGGATGAGGTGGTGCGATGCAGCCTGAtctgaagcggag

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU350942 True 220 lncRNA 0.45 1 15558629 15558848

Neighbor

gene id symbol gene type direction distance location
tbc1d32 tbc1d32,LOC107580719 coding upstream 1280 15506859 ~ 15557349 (+)
LOC113532226 LOC108257938 coding upstream 71232 15485091 ~ 15487397 (+)
trnaa-cgc_8 NA coding upstream 222373 15336184 ~ 15336256 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding upstream 236146 15315053 ~ 15322483 (+)
hddc2 hddc2 coding upstream 717328 14837944 ~ 14841301 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 93319 15652167 ~ 15762183 (+)
trnad-guc_27 NA coding downstream 207872 15766720 ~ 15766791 (+)
trnav-cac_15 NA coding downstream 208090 15766938 ~ 15767010 (+)
trnav-cac_18 NA coding downstream 212849 15771697 ~ 15771769 (+)
trnad-guc_30 NA coding downstream 215976 15774824 ~ 15774895 (+)
G296247 NA non-coding upstream 56802 15456282 ~ 15501827 (+)
G296249 cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217 non-coding upstream 81795 15474858 ~ 15476834 (+)
G296240 NA non-coding upstream 163608 15394819 ~ 15395021 (+)
G296151 hsf2 non-coding upstream 234042 15323849 ~ 15324587 (+)
G296181 NA non-coding upstream 252864 15305561 ~ 15305765 (+)
G296340 NA non-coding downstream 22067 15580915 ~ 15581183 (+)
G296348 NA non-coding downstream 148871 15707719 ~ 15763117 (+)
G296358 NA non-coding downstream 162823 15721671 ~ 15722446 (+)
LOC113532272 NA non-coding downstream 261506 15820354 ~ 15863193 (+)
G296459 NA non-coding downstream 553546 16112394 ~ 16113288 (+)
G296138 NA other upstream 253229 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 369017 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1171072 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1173124 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1174242 14384306 ~ 14384387 (+)
G296430 LOC108257881,LOC107603058 other downstream 607550 16166398 ~ 16180232 (+)
G296562 NA other downstream 755415 16314263 ~ 16315126 (+)
G296825 NA other downstream 1038302 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 1042856 16601704 ~ 16618438 (+)
afdna afdn other downstream 1121248 16680096 ~ 16807291 (+)

Expression


Co-expression Network