G296340


Basic Information

Item Value
gene id G296340
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15580915 ~ 15581183 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350948
ccccctgattctccttttagttatgctgttatagctagtcctgccggagtcccctgcactcctcattaagttttatctccacacggtgactgtgagtgtacctaaccactttccttctctttctgccgagctacactcctgagctgccggtgatccagacccccctacgctctggaccagatgagcatcactcctgagctgctggtaatccagacctcccccccttcactctggacctgtccaccggcaatgcttcatactgccacgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350948 True 269 lncRNA 0.54 1 15580915 15581183

Neighbor

gene id symbol gene type direction distance location
tbc1d32 tbc1d32,LOC107580719 coding upstream 23566 15506859 ~ 15557349 (+)
LOC113532226 LOC108257938 coding upstream 93518 15485091 ~ 15487397 (+)
trnaa-cgc_8 NA coding upstream 244659 15336184 ~ 15336256 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding upstream 258432 15315053 ~ 15322483 (+)
hddc2 hddc2 coding upstream 739614 14837944 ~ 14841301 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 70984 15652167 ~ 15762183 (+)
trnad-guc_27 NA coding downstream 185537 15766720 ~ 15766791 (+)
trnav-cac_15 NA coding downstream 185755 15766938 ~ 15767010 (+)
trnav-cac_18 NA coding downstream 190514 15771697 ~ 15771769 (+)
trnad-guc_30 NA coding downstream 193641 15774824 ~ 15774895 (+)
G296334 NA non-coding upstream 22067 15558629 ~ 15558848 (+)
G296247 NA non-coding upstream 79088 15456282 ~ 15501827 (+)
G296249 cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217 non-coding upstream 104081 15474858 ~ 15476834 (+)
G296240 NA non-coding upstream 185894 15394819 ~ 15395021 (+)
G296151 hsf2 non-coding upstream 256328 15323849 ~ 15324587 (+)
G296348 NA non-coding downstream 126536 15707719 ~ 15763117 (+)
G296358 NA non-coding downstream 140488 15721671 ~ 15722446 (+)
LOC113532272 NA non-coding downstream 239171 15820354 ~ 15863193 (+)
G296459 NA non-coding downstream 531211 16112394 ~ 16113288 (+)
G296428 slc35f1,LOC107727669,LOC107697151,LOC107743307,LOC107678858 non-coding downstream 557016 16138199 ~ 16185347 (+)
G296138 NA other upstream 275515 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 391303 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1193358 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1195410 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1196528 14384306 ~ 14384387 (+)
G296430 LOC108257881,LOC107603058 other downstream 585215 16166398 ~ 16180232 (+)
G296562 NA other downstream 733080 16314263 ~ 16315126 (+)
G296825 NA other downstream 1015967 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 1020521 16601704 ~ 16618438 (+)
afdna afdn other downstream 1098913 16680096 ~ 16807291 (+)

Expression


Co-expression Network