G296358


Basic Information

Item Value
gene id G296358
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15721671 ~ 15722446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350967
TTTGACTTTGGGTGGTTGGGTTTAAGGTTGGGTTTGAGGTTTGGGGTTAGCCAAATGTTGGCcaaagaacattttaaagtgtaatGATAGTAACCAAAGCAACCAAAGTATAGTCACCAAAAACTTCCACTACACCACTAGTGAAGATCCAGGTCTATGAAGTCAGAGTTAAGTAGAAAGCCATGCAGAATTGGAGCAGCTCCTTTCACTTTGTGCTTCAAGCACTTAACGGCGCTGAATACCTGCCATTGTGTGGTTCCCGGCAGCTCGAACCCAATCTGTCCTCTATTAGAGCTGTTGGTTTCATGAAAGACTTTGGAGAAAGGCTTTGAACATCCCAAGTGACCTTGCAGGACTGTGGAGTTAAAAAAACGAGAGCAGCTTTATATGTGAATGAATGCAGACATGCCATCCTTTCTTCCATCTTTGCTTCACCTCTTTTCTGAATGAGCACTGATTGTGTACGTCACATGAATAATCTAGGATTTTATTCCTCCAATACCAAAGCATTTAGATGGGTTTGAGGTGGTACAGTGGCCAGAGTGCTGTTCTGCTCCACTCAGCCCTCTCTCTGGTCTCTGCCTTATCCTGTCTTCTGTAAATGCCCTGAGAAATAAATAGCACAGGCTCCACAGTGGAGACTGTGGTGGTCTAGCTCTGTCGCCTTGCAATAAATCCTTGCAAATGAGCAGCGTAATTGCTTTTAAGTGCCCTTTTCAAAATTGTCTTCTGCTAGTTCCAGGGCGTGATCTACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350967 True 756 lncRNA 0.44 2 15721671 15722446

Neighbor

gene id symbol gene type direction distance location
tbc1d32 tbc1d32,LOC107580719 coding upstream 164322 15506859 ~ 15557349 (+)
LOC113532226 LOC108257938 coding upstream 234274 15485091 ~ 15487397 (+)
trnaa-cgc_8 NA coding upstream 385415 15336184 ~ 15336256 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding upstream 399188 15315053 ~ 15322483 (+)
hddc2 hddc2 coding upstream 880370 14837944 ~ 14841301 (+)
trnad-guc_27 NA coding downstream 44274 15766720 ~ 15766791 (+)
trnav-cac_15 NA coding downstream 44492 15766938 ~ 15767010 (+)
trnav-cac_18 NA coding downstream 49251 15771697 ~ 15771769 (+)
trnad-guc_30 NA coding downstream 52378 15774824 ~ 15774895 (+)
trnav-cac_20 NA coding downstream 52596 15775042 ~ 15775114 (+)
G296340 NA non-coding upstream 140488 15580915 ~ 15581183 (+)
G296334 NA non-coding upstream 162823 15558629 ~ 15558848 (+)
G296247 NA non-coding upstream 219844 15456282 ~ 15501827 (+)
G296249 cx32,cx32.2,LOC108257940,LOC108424424,LOC107602176,LOC107727577,LOC107675217 non-coding upstream 244837 15474858 ~ 15476834 (+)
G296240 NA non-coding upstream 326650 15394819 ~ 15395021 (+)
LOC113532272 NA non-coding downstream 97908 15820354 ~ 15863193 (+)
G296459 NA non-coding downstream 389948 16112394 ~ 16113288 (+)
G296428 slc35f1,LOC107727669,LOC107697151,LOC107743307,LOC107678858 non-coding downstream 415753 16138199 ~ 16185347 (+)
G296465 NA non-coding downstream 420613 16143059 ~ 16333438 (+)
G296429 NA non-coding downstream 429164 16151610 ~ 16165844 (+)
G296138 NA other upstream 416271 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 532059 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1334114 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1336166 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1337284 14384306 ~ 14384387 (+)
G296430 LOC108257881,LOC107603058 other downstream 443952 16166398 ~ 16180232 (+)
G296562 NA other downstream 591817 16314263 ~ 16315126 (+)
G296825 NA other downstream 874704 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 879258 16601704 ~ 16618438 (+)
afdna afdn other downstream 957650 16680096 ~ 16807291 (+)

Expression


Co-expression Network