G296430 (LOC108257881,LOC107603058)


Basic Information

Item Value
gene id G296430
gene name LOC108257881,LOC107603058
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16166398 ~ 16180232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351048
GGGAAATGCAAAAATACCAAatcagataattaaaaaaaagagcattttggttgtcaagaaaaaaattaaaaagcaaaaattcaTCATGTGTGATGTGACTGTGCACGTCATTTAAATACATTCCAGGAGCACACCCAAACTTTAGCACATCATAGCTCACAGAGATCATGACCTGTGAAACTCataatactaaaaatatttacacaatttacacaaaGCATCAATTTCAGTGTCTGTGGCTCCACACACCAGCCAGATCCATCATAAATTAAAATTCAGCTACAGTCccaaaaaacacactgcaatatGCAGGAGccataaaatgtctttttttaaaaaaagtaattataaaaatgaataaaaaatataaaatgtataaaatggaCATGTGGTCCcctaaaaacatttcagatgaaAATCCACCTGATGTCTGGGCCAGTTCATGGAGACACAGGCCTGAGGACGGGCTGCCAGAGGTCTGCTGAGAGGGCGTTGGTGCTGATGGCCAGTCGTGCGTGAACGTACTGCAGCACCGTCTGTTTCACTCCCTCCATGTAGAGCTGCTCACCTGAGTGCAGGTACAGCCAGATGAGCCGACTGAGCTGAGCGCTCGCAGAGGCACCGTGTAAATTGCCTTGAGAGATCTTTGTGTCGAACTCCAGCAGTGTGAAGAGCTCCTCAGGGAGCAGCTCTCTGAGCCAGGTGTTGTCCTCCAGGTAGATCCAGTCATGAAGCATCCTCTTCCTGCGCAGGAAACCCTGCACGTGCTGCAGGTACACGCTGTTACCAGACACCAAATACAGCTTGTAATAGGGAAGCGTCTCTATCATCTTCCAGTTGACGTAGTTCACAGCCGTCTCCTCCAGAGTGCATACTCGGCTCATCTGCACTTTGGCCACCTGCCAGAACCTCTCGTGTTCCACCAGCCTCTCCTGCATCTCTCTCTTCAGCAGCAGGTACACGCCATCCAGAGTGTCCTCATAAACCTTTCTGCGTTTCAGTCTGCCCCAGTCACGGCCGAGGATCCAGGCCACTAGTGACTTGCACATGGAGAAGTAGTTTCCCACTGTATGAATCCCGACGTTCTCGTCTCCCCGAGCCAATTTGCCCCTCCAGTAGTCGCTGGTGATGGGATGGAGGGAGGCCAGGtatctcacatcacacactgtttctcCCCATGTGGAAACTTTCTTCTTACTGTGTTTCCTCCACTGCAGGTATATGGCTCTGAGTTGGCGGTTTAGTGGACCCGGCTGGCGAAAGAGCCAGTAAGTGAAGAGCCACTGGAACCTGCACTGGGTGTACTGACGGTACATTGACTCCAGTTCAGAATGGTCACTGCTTTGGTGCTGCTTAAGAACGTAGTGAAAGAGCATCGTTGTACTTCCATGATGAGTGACAGCGAGGTTATACAACTCCCTCCATTCCATCCTGAGCGTCTCATCACCTTCTGGTTTCTCGTGAAGTTTCTCGGTGAACAGCTCTCTCGGCATCCCCCACAGCCTCTCCACGTCAGCACACGTCAGCTGTGCGGCAGGTAAAGGCACTCGCTCCTCCATTACAAGCCACTGTGTCCAGTACGCATGCGGAGGGAACGGCACTTCAGCAAACAGCTTCTCCTGAAGGGATCGGTTACAGTGGATGTTTCGGAAAAGGGATCTCCACATGAACACTAAACGAAAGGCGGTTTTGGCGGCGTAACCGGCTGTGGTGATGTTCGGCAGGCCTACCCCAAACGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351048 True 1740 TUCP 0.49 7 16166398 16180232

Neighbor

gene id symbol gene type direction distance location
cep85l cep85l,LOC107678822 coding upstream 2256 16101885 ~ 16164142 (+)
mcm9 mcm9,LOC107549683 coding upstream 72305 16069704 ~ 16094093 (+)
fam184a fam184a,LOC107678849,LOC107697135 coding upstream 98757 15948598 ~ 16067641 (+)
trnav-cac_20 NA coding upstream 391284 15775042 ~ 15775114 (+)
trnad-guc_30 NA coding upstream 391503 15774824 ~ 15774895 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding downstream 157962 16338194 ~ 16352056 (+)
tdrd15 tdrd15 coding downstream 311221 16491453 ~ 16506321 (+)
igf2r igf2r coding downstream 328330 16508562 ~ 16558106 (+)
slc22a2 slc22a2 coding downstream 379306 16559538 ~ 16569010 (+)
LOC113532379 NA coding downstream 391518 16571750 ~ 16573555 (+)
G296429 NA non-coding upstream 554 16151610 ~ 16165844 (+)
G296459 NA non-coding upstream 53110 16112394 ~ 16113288 (+)
LOC113532272 NA non-coding upstream 303205 15820354 ~ 15863193 (+)
G296348 NA non-coding upstream 403281 15707719 ~ 15763117 (+)
G296358 NA non-coding upstream 443952 15721671 ~ 15722446 (+)
LOC117599799 NA non-coding downstream 118770 16299002 ~ 16306433 (+)
G296568 NA non-coding downstream 141094 16321326 ~ 16322512 (+)
G296592 NA non-coding downstream 217749 16397981 ~ 16398468 (+)
G296594 NA non-coding downstream 240554 16420786 ~ 16422281 (+)
G296806 NA non-coding downstream 394835 16575067 ~ 16579149 (+)
G296138 NA other upstream 860998 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 976786 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 1778841 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 1780893 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 1782011 14384306 ~ 14384387 (+)
G296562 NA other downstream 134031 16314263 ~ 16315126 (+)
G296825 NA other downstream 416918 16597150 ~ 16597787 (+)
LOC113531918 LOC108257642 other downstream 421472 16601704 ~ 16618438 (+)
afdna afdn other downstream 499864 16680096 ~ 16807291 (+)
G296863 LOC108257755 other downstream 631885 16812117 ~ 16812793 (+)

Expression


Co-expression Network