G296825


Basic Information

Item Value
gene id G296825
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16597150 ~ 16597787 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351482
GTGCTTAATGACTTGATGTCACTTATTTCACAAACCACTTCCTGTCACTAAGTTTATGAGGTAATCAAGTGACAAATTAGTATGAGGAAATTTGTAAATGCACATGACTTTAACACCTTTTCTCATGATTATAAAGTCAAATTAAGATCCAGTCAAACACGAGTTTGtctcctttctttttcaggactgATGTTTTCCCCAGCTTTCTTAACTCAGTTCCAGGCTTATTCACTTGCACAGCGTCCTGAAACAGATCCAGTCTCTCACGCTGATGGTGTGGTAGATTGCAGGAAGTGTGTTTCCAACACTGTTATTATTAGAGCTGGAGTGGAGCAGGAAGTCCCAGCCTGCAGTCCTCAGCTAAAACAGTGCACTGGTAGGCTCTGACTGTCACCACTGAATAAAGCTTAATAACATTTCTACACACTTCTTAGTTTTCCATCCAGTCTCTTTACTCATCCCAAACCCATCTCATGTATGAGAACATGCCCTTGATCTGTAGCTAGGGGTTAATTTGAATTTgaggttgaaaatgacaaaattcatCCCTTTGTAAAGGTAGAATCCTCTAAAAAGCATGTTATCACTAAAGGGTTAAGCAGATATTATAAAATCTGCTGTCCTACTGTCCTGCCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351482 True 638 TUCP 0.40 1 16597150 16597787

Neighbor

gene id symbol gene type direction distance location
LOC113532379 NA coding upstream 23595 16571750 ~ 16573555 (+)
slc22a2 slc22a2 coding upstream 28140 16559538 ~ 16569010 (+)
igf2r igf2r coding upstream 39044 16508562 ~ 16558106 (+)
tdrd15 tdrd15 coding upstream 90829 16491453 ~ 16506321 (+)
gopc gopc,LOC107727658,LOC107743304,LOC107697149 coding upstream 245094 16338194 ~ 16352056 (+)
snx9b snx9,snx9b,LOC108424479,LOC103024560,LOC107678839 coding downstream 242749 16840536 ~ 16881841 (+)
pomcb NA coding downstream 299750 16897537 ~ 16912713 (+)
si:dkey-206f10.1 LOC108257757,LOC108424481 coding downstream 370791 16968578 ~ 16981887 (+)
parp1 parp1,LOC107697162,LOC107678834 coding downstream 386906 16984693 ~ 17007941 (+)
lin9 lin9,LOC107678835,LOC107726751,LOC107697095 coding downstream 410408 17008195 ~ 17022604 (+)
G296806 NA non-coding upstream 18001 16575067 ~ 16579149 (+)
G296594 NA non-coding upstream 174869 16420786 ~ 16422281 (+)
G296592 NA non-coding upstream 198682 16397981 ~ 16398468 (+)
G296465 NA non-coding upstream 263712 16143059 ~ 16333438 (+)
G296568 NA non-coding upstream 274638 16321326 ~ 16322512 (+)
G296859 NA non-coding downstream 66431 16664218 ~ 16693583 (+)
G296861 NA non-coding downstream 72964 16670751 ~ 16759650 (+)
G296868 NA non-coding downstream 89415 16687202 ~ 16689258 (+)
G296864 NA non-coding downstream 129498 16727285 ~ 16810842 (+)
G296866 NA non-coding downstream 174144 16771931 ~ 16781784 (+)
G296562 NA other upstream 282024 16314263 ~ 16315126 (+)
G296430 LOC108257881,LOC107603058 other upstream 416918 16166398 ~ 16180232 (+)
G296138 NA other upstream 1291750 15223646 ~ 15305400 (+)
trdn trdn,fbrsl1 other upstream 1407538 15123767 ~ 15189612 (+)
trnas-gcu_16 NA other upstream 2209593 14387476 ~ 14387557 (+)
LOC113531918 LOC108257642 other downstream 3917 16601704 ~ 16618438 (+)
afdna afdn other downstream 82309 16680096 ~ 16807291 (+)
G296863 LOC108257755 other downstream 214330 16812117 ~ 16812793 (+)
syne1a LOC108257639 other downstream 654312 17252099 ~ 17479271 (+)
max max,LOC107721316 other downstream 1191313 17789100 ~ 17807177 (+)

Expression


Co-expression Network