Gene
RNA
| Item | Value |
|---|---|
| gene id | G298757 |
| gene name | LOC108258230 |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 20243428 ~ 20246402 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU353862 | True | 291 | lncRNA | 0.53 | 2 | 20243428 | 20246402 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113523908 | LOC108261534 | coding | downstream | 93955 | 20147871 ~ 20149473 (-) |
| LOC117599697 | LOC108261534 | coding | downstream | 136183 | 20105758 ~ 20107245 (-) |
| LOC117599719 | LOC108261534 | coding | downstream | 312175 | 19924626 ~ 19931253 (-) |
| LOC117599680 | NA | coding | downstream | 365683 | 19876162 ~ 19877745 (-) |
| LOC117599694 | LOC108261534 | coding | downstream | 377766 | 19864134 ~ 19865662 (-) |
| nfkbiaa | LOC108258222 | coding | upstream | 30565 | 20276967 ~ 20279845 (-) |
| gtf2a1 | gtf2a1,LOC107721813,LOC107658177 | coding | upstream | 47010 | 20293412 ~ 20303747 (-) |
| trnae-uuc_5 | NA | coding | upstream | 62887 | 20309289 ~ 20309360 (-) |
| trnar-acg_12 | NA | coding | upstream | 63118 | 20309520 ~ 20309592 (-) |
| trnah-gug_15 | NA | coding | upstream | 64406 | 20310808 ~ 20310879 (-) |
| G298752 | NA | non-coding | downstream | 6194 | 20236928 ~ 20237234 (-) |
| LOC117599709 | NA | non-coding | downstream | 52784 | 20190083 ~ 20190644 (-) |
| LOC117599712 | NA | non-coding | downstream | 59854 | 20183058 ~ 20183574 (-) |
| G298549 | NA | non-coding | downstream | 289130 | 19953944 ~ 19954298 (-) |
| LOC117599713 | NA | non-coding | downstream | 415504 | 19826993 ~ 19827924 (-) |
| G298758 | NA | non-coding | upstream | 833 | 20247235 ~ 20247915 (-) |
| G298794 | NA | non-coding | upstream | 142682 | 20389084 ~ 20390717 (-) |
| G298801 | NA | non-coding | upstream | 183112 | 20429514 ~ 20430208 (-) |
| G298823 | NA | non-coding | upstream | 245607 | 20492009 ~ 20501140 (-) |
| LOC117599711 | NA | non-coding | upstream | 398987 | 20645389 ~ 20646391 (-) |
| G298543 | LOC108261534 | other | downstream | 302429 | 19884160 ~ 19940999 (-) |
| G298475 | NA | other | downstream | 651991 | 19590959 ~ 19591437 (-) |
| LOC113524722 | NA | other | downstream | 769452 | 19472020 ~ 19473976 (-) |
| LOC113524711 | NA | other | downstream | 791824 | 19429191 ~ 19451604 (-) |
| LOC113525604 | LOC108258223 | other | downstream | 833054 | 19374773 ~ 19410374 (-) |
| trnah-gug_23 | NA | other | upstream | 118883 | 20365285 ~ 20365551 (-) |
| trnah-gug_24 | NA | other | upstream | 123806 | 20370208 ~ 20370279 (-) |
| trnae-uuc_13 | NA | other | upstream | 131903 | 20378305 ~ 20378376 (-) |
| trnah-gug_25 | NA | other | upstream | 132432 | 20378834 ~ 20378905 (-) |
| LOC117599698 | NA | other | upstream | 193218 | 20439620 ~ 20442292 (-) |
