LOC117599698


Basic Information

Item Value
gene id LOC117599698
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20439620 ~ 20442292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU353922
CTTCTTCTATCAGAGAGGTTCCAGCACACAGGACTGATAGAGCTCCAGTAGATCATATCTGTAAAGTCATGTGACTCATCACAGGATCAGAATAGACAAGAATTCACTGTGAGCTTCACATCTCCTTACAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGCGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGGTCAAAGACAAAGATAAGGTAGTTTGGTACAGACAGAGTTTTGGAAAATTACCTCAGTTTTTAGCAAGACCATACAGGAGCAGTTTGGGCTACACATTTGCTGAGGGATTTAAAGATAGCTGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAACGAGAGAAGATGATGAAGGAGAATATTTCTGTGGAGAATTGGATGGAAGTGCACTAAAGTTCACATCTGGAACACGTCTGCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACTTGGAACGGTTAACAAGAACACAGATTCTGTTACATCCCAGGGTTCAGACAGCAGCGATGGAAAAGgaAATGAACATTGGATTATTGCCTTAACAACCTCCATAATAATATCTCTTATTGTAATCGTGGTTCTGATtggagttttatttaaaaatcaaagaagAGG
>XM_034313575.1
CagtcttttgtatttttagctACAGAAACATGAacgtaaataaatatttaagctCATTGAAGGCACGAAACTGGAGCTTAAGGAACTTCTAAAGGtaaatttgcattgtttattttgACTGTTAACAAAGTAGaaattaatgtcattaaaaaatatatttttggacCCAAAACATTGGCACTGACCAAAAAGCACTTCATTAAACTTCTTCTATCAGAGAGGTTCCAGCACACAGGACTGATAGAGCTCCAGTAGATCATATCTGTAAAGTCATGTGACTCATCACAGGATCAGAATAGACAAGAATTCACTGTGAGCTTCACATCTCCTTACAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGCGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGGTCAAAGACAAAGATAAGGTAGTTTGGTACAGACAGAGTTTTGGAAAATTACCTCAGTTTTTAGCAAGACCATACAGGAGCAGTTTGGGCTACACATTTGCTGAGGGATTTAAAGATAGCTGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAACGAGAGAAGATGATGAAGGAGAATATTTCTGTGGAGAATTGGATGGAAGTGCACTAAAGTTCACATCTGGAACACGTCTGCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACTTGGAACGGTTAACAAGAACACAGATTCTGTTACATCCCAGGGTTCAGACAGCAGCGATGGAAAAGgaAATGAACATTGGATTATTGCCTTAACAACCTCCATAATAATATCTCTTATTGTAATCGTGGTTCTGATtggagttttatttaaaaatcaaagaagAGgGGCTTCCAACAACCATCCAAATAACACAAATCAGGTAATCCAGTGTTTTATCATGtgtattgattttctttaaataaatacagatctgTCCTCGAGTCTACAGGACATGTAGGATTATAACTGACATCACCttacaaaatacagtaaataacttttttgtgaatcttttaATCCGCTCTGGTTTATAAACGGCTCTTGTTCTTTAtcatgctgatgatgatgatgtcttgAACTATGCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGCGCCatgaagataaaataaaataacaagttaaaataaaataaaaagaaatcaattcAGACCTGAAACACTTCTGCACAGTGTAACTACTTGTTGTCATTAGTCTTTCATTAAGTTTGAATAGTttctatttaaattatattttgaatattttctcaGCATTTTCTCGTATATCACCCTTGATTTAtagaacataaaaacatttatatgttttatgaTTCTAAATTGTATGCATCAAGGTTTCTGTATTGCCTAATCATTGTAGATTTGTAGTCAGTATACTGTATCTGGAAATATAATGCGTCTTATAcgtcttttacattttaaaacgtTTTAGTGCAAGAGGGCTGAATAAAAATATTCGACTGCAACATGAAATTAAGGTTCAGATACTAAATTTTTATACcagattaaaatgtatattaatgaCTGATAAAGTACTAATGTGttctttacattaaatattttttaatttttagaatTCTGATtgtatattgattataaaaatctgtaaaagcTGTATTACACCATTTTaacatcactgacatcatttTAAGTTAGTTACTGTAGCATCAGCTCCACCGTCAGCACTTCAGCCACTCACATTACGCCGTTCTCCTGCCTCCTGATCTTACTGCGCTCTAAtttcctgctcatttcctctGTGGATAGACTCAACACCAGTGCACTTTCCATTGATCTCTGCAAGGTTTTGTGACTTTTATTTTCCATctccatttgtttttttccccttttgccTCTTTCCTAAGCCCATTGTGTTTCTACATCCGTTCCCTGTTGATGTAGATCTGCTAATAAAAGTATTGCATCCACTCTCACTCCAGTT
>XM_034313576.1
agtcttttgtatttttagctACAGAAACATGAacgtaaataaatatttaagctCATTGAAGGCACGAAACTGGAGCTTAAGGAACTTCTAAAGGtaaatttgcattgtttattttgACTGTTAACAAAGTAGaaattaatgtcattaaaaaatatatttttggacCCAAAACATTGGCACTGACCAAAAAGCACTTCATTAAACTTCTTCTATCAGAGAGGTTCCAGCACACAGGACTGATAGAGCTCCAGTAGATCATATCTGTAAAGTCATGTGACTCATCACAGGATCAGAATAGACAAGAATTCACTGTGAGCTTCACATCTCCTTACAGCTAATGGACCAATCAAATCAGTCCACAGCTTCAAAACATCCAATCAGGCGTGAGTCTGGACCTGGTTTTCTACTGAACACACAAGTTCATTACCTCACTATCACTTTGTCTAAACAGGAACGATGATCACACTCTTTGTCGCTCTTTACTCTCTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACAGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTGACATTAGCAGGGTCAAAGACAAAGATAAGGTAGTTTGGTACAGACAGAGTTTTGGAAAATTACCTCAGTTTTTAGCAAGACCATACAGGAGCAGTTTGGGCTACACATTTGCTGAGGGATTTAAAGATAGCTGCTTCAGTATTACTGTAAATGACCATAAGTTTGATCTCAACATTAATGAAACGAGAGAAGATGATGAAGGAGAATATTTCTGTGGAGAATTGGATGGAAGTGCACTAAAGTTCACATCTGGAACACGTCTGCAATTTGAAGgtaAAGAGATGAAACTCTGTCCTACACTTGGAACGGTTAACAAGAACACAGATTCTGTTACATCCCAGGGTTCAGACAGCAGCGATGGAAAAGgaAATGAACATTGGATTATTGCCTTAACAACCTCCATAATAATATCTCTTATTGTAATCGTGGTTCTGATtggagttttatttaaaaatcaaagaagAGgGGCTTCCAACAACCATCCAAATAACACAAATCAGCTGTGAGTTTTGCTAAGAAACCTTCATCCTCCAGAACATCCAGAGACAAGCGCCatgaagataaaataaaataacaagttaaaataaaataaaaagaaatcaattcAGACCTGAAACACTTCTGCACAGTGTAACTACTTGTTGTCATTAGTCTTTCATTAAGTTTGAATAGTttctatttaaattatattttgaatattttctcaGCATTTTCTCGTATATCACCCTTGATTTAtagaacataaaaacatttatatgttttatgaTTCTAAATTGTATGCATCAAGGTTTCTGTATTGCCTAATCATTGTAGATTTGTAGTCAGTATACTGTATCTGGAAATATAATGCGTCTTATAcgtcttttacattttaaaacgtTTTAGTGCAAGAGGGCTGAATAAAAATATTCGACTGCAACATGAAATTAAGGTTCAGATACTAAATTTTTATACcagattaaaatgtatattaatgaCTGATAAAGTACTAATGTGttctttacattaaatattttttaatttttagaatTCTGATtgtatattgattataaaaatctgtaaaagcTGTATTACACCATTTTaacatcactgacatcatttTAAGTTAGTTACTGTAGCATCAGCTCCACCGTCAGCACTTCAGCCACTCACATTACGCCGTTCTCCTGCCTCCTGATCTTACTGCGCTCTAAtttcctgctcatttcctctGTGGATAGACTCAACACCAGTGCACTTTCCATTGATCTCTGCAAGGTTTTGTGACTTTTATTTTCCATctccatttgtttttttccccttttgccTCTTTCCTAAGCCCATTGTGTTTCTACATCCGTTCCCTGTTGATGTAGATCTGCTAATAAAAGTATTGCATCCACTCTCACTCCAGTT

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU353922 False 843 TUCP 0.40 4 20440866 20442088
XM_034313575.1 True 2182 mRNA 0.35 5 20439620 20442292
XM_034313576.1 False 1975 mRNA 0.35 6 20439620 20442291

Neighbor

gene id symbol gene type direction distance location
LOC113524747 LOC108258215 coding downstream 2146 20425285 ~ 20437474 (-)
trnae-uuc_16 NA coding downstream 16038 20423511 ~ 20423582 (-)
trnae-uuc_15 NA coding downstream 17694 20421855 ~ 20421926 (-)
trnae-uuc_14 NA coding downstream 20259 20419290 ~ 20419361 (-)
LOC113524770 calm1,LOC102778633,LOC102293206,LOC107396020,LOC105896953 coding downstream 36061 20392640 ~ 20403559 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding upstream 124654 20566946 ~ 20575254 (-)
LOC117599679 LOC108258211 coding upstream 142375 20584667 ~ 20591786 (-)
LOC113524753 NA coding upstream 151149 20593441 ~ 20611269 (-)
LOC113524752 NA coding upstream 171430 20613722 ~ 20653212 (-)
LOC113524743 LOC108258194 coding upstream 299778 20742070 ~ 20750140 (-)
G298801 NA non-coding downstream 9412 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 48903 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 191705 20247235 ~ 20247915 (-)
G298757 LOC108258230 non-coding downstream 193218 20243428 ~ 20246402 (-)
G298752 NA non-coding downstream 202386 20236928 ~ 20237234 (-)
G298823 NA non-coding upstream 49717 20492009 ~ 20501140 (-)
LOC117599711 NA non-coding upstream 203097 20645389 ~ 20646391 (-)
G298878 NA non-coding upstream 233751 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 263185 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 312680 20754972 ~ 20888652 (-)
trnah-gug_25 NA other downstream 60715 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 61244 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 69341 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 74069 20365285 ~ 20365551 (-)
G298543 LOC108261534 other downstream 498621 19884160 ~ 19940999 (-)
G298875 NA other upstream 213707 20655999 ~ 20664540 (-)
G299022 NA other upstream 630634 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 1149982 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1529789 21972081 ~ 22067610 (-)
G299449 NA other upstream 1553822 21996114 ~ 22000833 (-)

Expression


Co-expression Network