G298875


Basic Information

Item Value
gene id G298875
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20655999 ~ 20664540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354008
TGAAACAGCTGGTAAAGCAAGCCCAGTCTGGAAGCAGCAAACAGCAAAGCCAGCAGCACTGCAATGAGACAGCAGCACACCACCACTCCGAGGTCCATTTCCAGGAAATGTTTTTTATCAGCTAGGAGAATTCAGTCCAGGTACAGGTGTCACAACCTGTGAGTAAAGGTGCTGCAGAAATCTACCTTCCTCTCATCCGGAGATCACTTTACTACTCCTGCGGTTCTCAACATCACGCAACCTACTTGTCTGCTGCTCAACATGTTACACACGACTCATCTTATCTCCAACTTATAAACCACCCGAAACCTGGCCGTTGTTGACCTGTGAACAGGATCCGCCCCTTTTCTCTCCAAGCGCTCCGCTAGAAGTGCGCAGCTTCCCGCATCCCAGGTGTAGCGCCACCGTGACGTGGAGGCAAAGTAACACGCAACAACCAGGTGaaaggttaacacacacacacacacacacacaaacacacacacacacactcactcacattcagtaaccactttatcctgatcagggtcacagcTGAAACACTATCCTGGTAACACTGGGGGTAAGGAGGAGATACATCATGGATGGAGCACAAGTCCATCACAGGGCCccatgtacacacaaacacacactcacacactctttcacacctaggggcaattcacCTACTTTGGGGAGATAAGACAGAAACTAGAGGACCCaaaagaaacccacacaaacatggaGAAAGACATGCAGAAACAAACATGCAGAGactccacagagacagtaacctgGGCTCAGGATCAAAACGGTGACCCTGACGCTGTGAGGTGGCAGTGCTATATCTGCTGCACCACCTTTCCatatttttctaaaatgaaTTGTATAGCAAAATTTAAAAGGAGTGTTACAATGACCGTGTTACTTAACCCATTGTATGGAGGTAGTCTTCATCCTCAGACTCTTCCTCTTTTACATGAAATCCTCCGTTCAGTTGGACTATGTTTTCCACAGAGTTTGATGTTCCATCACCTGAAATTCCACCATGTATGTTTAAATACTTTCAACTCAAGTATAACTCTGAAGAACAAAGGGATGAAGTTGGGAGCACAAGTGTTGAAAAACTGGTTCACTCATGAATAAATTCAATTTATGAATATAAAGAGTTACTGAGCTCAGGTCTGGAGCTTAATATACCATGTTTTCTTACAGAGATAGtcttcttcttcagcttcttccttttttacatgtgtgtgttgacaCACAGGCGTGATGTGTCCCACAGAGCCTGTCGTGGTTTCACCTGAAATTTCATCAACTGAATTTAAATATAGTCatgtaaatgtacaaaacaaatgaaagttCGCTCACAAATGAAACTAAGCTAAACTAAAAAGTATTACTGATCATCAGACTGGACTGTAATGTGCCATGTTGACTTACAAACGTACTCTTCATATTCAGgttcttccttttttatatCTTTCTGAAGGTCCGGGACATGTCCCACAGAACCTGATGTCTCTCCCCCAGACACTGTACAAGTTTCCGTTCGTACACTACAGCAAACCTAATGACCAAAGAGGAATAATActtattaacaaaaacaatcatCACTATTGATATATCCTGAGCATGAGCTCTGAGACGATGATAACTTGGTAGCATGCAAACTACCATGGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354008 True 1667 TUCP 0.43 2 20655999 20664540

Neighbor

gene id symbol gene type direction distance location
LOC113524752 NA coding downstream 2787 20613722 ~ 20653212 (-)
LOC113524753 NA coding downstream 44730 20593441 ~ 20611269 (-)
LOC117599679 LOC108258211 coding downstream 64213 20584667 ~ 20591786 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding downstream 80745 20566946 ~ 20575254 (-)
LOC113524747 LOC108258215 coding downstream 218525 20425285 ~ 20437474 (-)
LOC113524743 LOC108258194 coding upstream 77530 20742070 ~ 20750140 (-)
trnae-uuc_17 NA coding upstream 85960 20750500 ~ 20750571 (-)
LOC117595662 LOC108258028 coding upstream 320648 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 331261 20995801 ~ 20999074 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding upstream 428937 21093477 ~ 21112429 (-)
LOC117599711 NA non-coding downstream 9608 20645389 ~ 20646391 (-)
G298823 NA non-coding downstream 154859 20492009 ~ 20501140 (-)
G298801 NA non-coding downstream 225791 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 265282 20389084 ~ 20390717 (-)
G298758 NA non-coding downstream 408084 20247235 ~ 20247915 (-)
G298878 NA non-coding upstream 11503 20676043 ~ 20677510 (-)
G298890 LOC108258199 non-coding upstream 40937 20705477 ~ 20730010 (-)
G298906 flrt2,LOC108258011 non-coding upstream 90432 20754972 ~ 20888652 (-)
LOC113525588 NA non-coding upstream 268063 20932603 ~ 20947358 (-)
G298934 NA non-coding upstream 285302 20949842 ~ 20950072 (-)
LOC117599698 NA other downstream 213707 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 277094 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 277623 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 285720 20370208 ~ 20370279 (-)
trnah-gug_23 NA other downstream 290448 20365285 ~ 20365551 (-)
G299022 NA other upstream 408386 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 927734 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1307541 21972081 ~ 22067610 (-)
G299449 NA other upstream 1331574 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 1360076 22024616 ~ 22032359 (-)

Expression


Co-expression Network