G298890 (LOC108258199)


Basic Information

Item Value
gene id G298890
gene name LOC108258199
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20705477 ~ 20730010 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354043
gggaaaaaaagagaaatcaaaGCAGACATACAAATCCAATGATCAAGGCAACAATCAGAGTCTAAAGTAAGTAAAGAGGTCAGGCAACGAGCTAACACGCTGAACTTGGCTAGCGTAACGGGAAAACAAGAAAAGCAGGCTGAGGTCAAAAACTAAACAATGGACTTGAGTAAAGAAAGGCTCAGTAATGTTGCAGCAATATATCTGcagcaagactttgcaaagaaACTGTGAACCTGTGTTTGGTTATATAGAGTAGTTTGTGGATTGAAGACAGGTATGTAATCAGTACTCTGGTGACCTTGGGTTGTGCTGAGAGTTTACTTCCTGGTTGTGCACGTGATCCAATTTCTGACCTGAGGGCTGTACTACGAAGCAAGCTCAAATTAGCCAATTTCACCTAACCAAACATTCCCCAACTGGGATAACTGGTATCATGACATGGGTTAACCGACGATGTGGGTTAAGCTGAGCCAGGTTTTCCTCATCAAGTCCTGCACACTTTCACTTTAAAAAGGGCAGATCTCACACTGGCTCGAATGCAGATGAAAAACTGCAGATGGATCACGTATATTTTAGGGCAGAAGAGCAAATGATAATTAATTCCTTTTAAAGAATTCAAATATATAATGATGgcaaaaaagcaacactgtCACTACTGCAAGATGCATGAAGGCACATGGCAAAAAATAGCTGACAATGTAAATGCGAGTTATAATAGATGTATAatctataattttatttttactcacatGACACTTACAGTAACTGtaattgcaaataaaaaagCTAGCAGTAAACTGTCATTAGTCATTGCAGCTGCAATCCCAACTGTGTTAGACAGCAGTCTTGTCAGCAGGTaaagacaaaatataaaaatattaaacgaAGTAGGCTACTTGTTTAAAAGTTGATGTCCTTACTCTCTTCTTTGTCTGATTGCTTCGCCTATGACAAAGTGGTGGGCCTATACCTCCAGATTACACACTGGCTGAAGAATTGGCCCTTCAATATATTTTTTCGACTTAATCCACAGGTGGTTAACACTAACAGACTTCCTCCAAACCTAGGACCACCCGCCTGTAGGCATACAGGGTGACCTCTGAGGTAAATCTGATTTATCAAGCGTTTTAACAGCTCCCAGGTATGGAGTCATGGAGTATAACCTCCTGCAAATTAAGTAAATCAAATTGTAAATTGAACAGCTGGAGTGTTGCAATGTTGAAATGTACTTCTCAAATAATTGTAATGTCTTAATGTAGCCTTGTTTCTTCTCTTTTGCAGGATAGACAAATTGCGGAATTATGAAATCAACTGGTCAAATAAAAATTGTGTCCACTGTTTAATATGTGGTGTTCAAACAGTAACATAAATTCATGAAGTAACAAAGTATTGTTCTGCAGTGGCCCGACTCACAGCCCTGCCTCAGAGTGTACCATAGCGAGAGGATGCACCAAGGGGTGGTGTCTCTCTTTCCTAATCATGGTAATACTGTGCAGCACTGTTATGTCACATGGCTTGACTGGGTCTACACTTAAAAGTCTTAAAAGTACAATTTGAGAATCTAATAGGTCATTTCTATCCTGACCGTAGTTTTCGCATGACCCTCTTAAATCTACCCTGATGTATAGTCAGTGACTCTGGCTACAGAGGTATCAGGACTTCTTGCAGGTACACCTCAGTTTCCAAGTCCATTCAACAGATCTACAATGCAGAATGGACAGGAACATTTGAAGAAAATATTCTAAAGCAAAACAATACAGTAAGGTAGTCAGCATTCATACCAAGTGCTAAGCAGTGATATAATGTAGACTCCCTGAGAATATGAGTCGTGAACAGACCCAGGCCATATTGCCCTAATGCTGGTAGTCAGGGACTGATCACAGCTCATgtaaacagaggaaaaaatgtcTTAAGGGGTTCTATATTCATGTTCTGTTAAAGCCCACTTTGTTACTACTAGATATTTCAGGAAGTGTGTAAATTAATAGTCAACCTGAACTCTGAAGCTATGCACTGACTTCCCTTTAGATTCATGCACCCACAGGGATGATttaacagtgatgtgtgtgcagTCTAATCCACCGATTACTCTGCAAAATCCTAACAGACTACAAACACATTACAGATCAACGAACAAGATTCTGTTAATTTACATAAACTACAACCCTAattccaaaaaagttgggacagtatggaaaatgctaataaaaataaaaacgagTGATTTATAAATTCTATTCACCCTGTACTATATTGAAAACACTACAGCACCACATTATTTGACGTTTTACCTTGTGAATTTAagaggtttttttaaatatgcactCATTTCAAATCTGATGATGGCAACATGCAGGACTGCAGGCCAATCTAGCACCCACACCCTCTGCTTACGCAGCCATGCACTTGTAATCTGGGCAGAATGGGGTTTgacattgtcctgctggaaaatGCAGGGACATCCCTGGAAAAGACGGCGTCTAGATGGCAGCATATGTTGCTCCAAAATTTGTACATATATTTCTGCTTTAATAATGCCCACATAGATGTGCAAGTTACCCATGCCATGGGCACTGACACACCCCCATACCATGACAGATGCTGGCTTTTGGACCTGACGCTGGTAAGAGTTTGGATGAAAAAAACTATTTGAAATGTTGACTCGTCGAACCAAAACACACGCTTCCACTGTGCTACTGTCTATCTCAGATGAGACCGAGCCGAGAGAGGTCGGTGGTGCTTCTGGACAGTGTTGACATATGGCTTCTGCTTTGCATAGTAAAGCCTTAACTTACATCTGTGGATGCAGCGGCGAATGGCGTTAACTGACAAAGGTTTACTGAAGTATTCCCAAGAACGTCACAATATCTATTACAGACGGATTTTAAGACGGTGACATTTGAGGGATCGGagatcacacacattcagaagTGGTTTTCGGCCTTGCCCTTCAAGCACAGAGATTTGACCGGATTCTTTGAATCATTTAATTATATAGAATCTTTTAATTATAGAGTGAAAAGCTTAAAATCCTACCCATTTATATTTTGGCGACCATTGTTCTCAAAGTGCTGGATTAATCGCTAATGCATCTGTTGGCAAATTGAAGAGCCTCGACCCATCCTTGGCTCATGAAGGACCAGGCCTTTCTTGGAGGTTCCTTATATAACACGTTTGCCTCATCTATGTAACATCACTTGTTTCACATCACCTTGTTATTTCAAACTGTCACATCATTATTCTTCCTAAATCACTCCGTCCCAACTTTCCTGGAACAACTTTTAAAGTTGATTAGATAAAACATGAATACATTACATTGCCtttatactgtttttgtttgaataCAATTCAAAGTAAATTTTAGCAGTAAAATTactgctttctgtttttatttgcatttcatttactgtcccaacttttttggaatTGGGGTTGTCTCTTCCTGAAATCTCTAGCATGCCGTAGAAATCCTTTCACGACACGAGCAGCAAGCTCTACAGGATTCTGGAGGAATGGCGACACAATCGCAATTCCTAGATCTCTGATTGGACAGGAGGCAGCCTTTATACACTCTTAGTGTGGTTACTTTCAACTTAACCTGCCCGAAACAGGTTAGCCGTGTAGAGAAGGTTGCCATGGTGATCTACCCATCTTAAAAGAGAGCCATCTTTGGGGTACAGATAAGCCAGCATTTAACCCTAAGTTAGCTCGCTTAGCCTGCAGTCCTGCTTCGTGGTACACCCTCTGGTGATTGGCTGTGTGTTAAAGGTACCTGAATAAGTAAATCCCAAATCAGTTTCTATGTaatgtgaatgcgctggtgttgtATGAGATTACTCTGctgattaaaactcttcccacactgcaagcagtgatacggcttttCTCCATTGTGAATGCGCTGATGAACTTTGAGATTACCTTTATCTGTAAAcgtcttcccacactgcgAGCAGTGATATGGCTTTTCTCCATTGTGAATGCGCTGATGAACTTTGAGATTACCTTTATCTGTAAAcatcttcccacactgtgagcactgatacggcttttctcctgtgtgaatatGCAAGTGTGTTTTGAGATGACTCTGttgattaaaactcttcccacactgtgagcaacGATACGGCTTTTCTCCATTGTGAATGCGCTGATGTATTTTGAGGTTACCTTTTTCTGTAAAcgtcttcccacactgtgagcactcATATGGCTTTTCTCCTGAatgaatgcgctggtgtcgcTGTAGATTATTGTGTTGGGAAAAagtcttcccacactgtgagcagtgatacggcttctctcctgtgtgaatgcgctggtgtagTTGGAGATTTCCCTGTCGAATGAAACTCTTACCACATTCTGAGCAGTGATATGGCTTTAATCCTGTGTGAATGCGTTGATGTAGTTGGAGATTACTCTGTCGAATGAAACTCTTAccacactctgagcagtgatacaacttttctcctgtgtgaatgcacTGGTGTCGTTGGAGATTATAGTGTTGggcaaaactcttcccacactgtgagcagtgatacggcttctctcctgtgtgaatgttcTGGTGTCGTCTGAGATTACTCTGGTCAGTAAAACTCCTCCCACATTGAGAGCAGGGATAGACTTTCTCCATTTGCTGATCAGAGGTGTTACTATTGCGAATACCAGAGATTGTCTGCTGAATACTGGAGCTTCTTGTGGATGTAACGTTCTCATATTTTATCTCTCCTGATTTTATCAGTCTCTCGTATTCCTCATAGTGGCATCTTCTGATGTGTTTGTGGAGGTAAATTTGAGATGTATAGGAAAGTGAACACGAGGAGCAGAAGAAGACTTGTACCTGGGCATCATTCATTTCTGGAGCAGAAAATGGCCAGTATTAGAAACTCACTGTGAAATAGATACTAAATAATTAACCTATttttagaaacaaaacaaataatggAACTGAGGCATTCTGAATTATGG
>TU354044
TTTATCTTTTAATGCAGATTCAGTTTTACCCATTCATAAAATATCAATCCCAGATACAGTGAGCGGCACCAAACATTCCCATCAGAAACTGTGATtatacagtaaacagtaaatacATTCATCGAAATACCTTACACACATCATGGTAAGTGTTAAAGATCAGTTTattcaatgttatttttttcttatttagaGAAAGATCAGATGATGCATCACAATCTGATGACTCCATGCTGGAGCACTTGGGTGTTAAAGGCATCTGAATAAGCACATTTCAAATCAGTTTCTATGATCCGTGAATGTGTTGGTGTTGTACAAGACTACTCTTCTGATggaaactcttcccacactgtgagcactgaTACGGCTTCTGTCCTGTGTGAATATGCAAGTGTCTTTTGAGATGACTCTGttgattaaaactcttcccacactgtgcaCAGTGATACGGCTTTTCTTCACTGTGAATGCGCTGATGTATTTTGAGACTACCTTTCTCTCTAAACATCTTCATACAGTATGAGCACTGATACAGCTTTTCTCCTgagtgaatgcgctggtgtcgcTGAAGATGACTCCGCTGATTAAAGCTCTTCCCACACTCCGAGCAGTTATATGGCTTTTCTCCTGTATGAATGCGCTGGTGGAGATCGAGATTACACTGTcgattaaaactcttcccacactgtgagcaggaatacggcttctctcctgtgtgaatatgCAAGTGTCTCTGAAGATTATTCAGttgattaaaactcttcccacactgcgagcagtgatacggcttttCTCCGTTGTGAATGCGCTGATGAACTTTGAGATGGCGTTTATCAGTAAACATCTTCTCGCACTGGGAGCAGCGATActgtttttctcctgtgtgaatatGCAAGTGTGTTCTGAGCTGACGTTGctgattaaaactcttcccacactgtgagcaacGATACGACTTCTCTCTattgtgaatgcgctggtgtacGTTGAGATTACCTTTATCTATAAACATCTTCCTACAGTATGAGCACTGATACGGTTTTTCTCCAGAGTGAATGCGTTGATGTCGCTGAAGACTACTGTGTTTTGAAAAACTCTTGCCACACTCTAAGCAGCGATACGGCTTTTCTCCTGTGTGGCTGCGCTGGTGTAGCTGGAGATCACCCTTTCtaataaaactcttcccacactctgaGCAATGGTACGGCTTTTCTCCATTGTGAGTGCGCTGGTGTACTTGGAGATTATAGTGTTttgtaaaactcttcccacactgtgtgcagtgatacggcttctctcctgtgtgaatgcgctggtgtcgtCGGAGATTACGCCGGTTactaaaactcttcccacactgtgagcaggaATAGACTTCTTTCTCCATTTGTTTATTAGAGGTGTTAATGTCGAGTGTAACAGAGACTGTTTGCTGAATACTGGAGCTTATTGTGGTGATATGGTTCTCATCTTTTAACTCTCCTGATTGTAGCAGTCTGTCATATTCCTCGTAGTGGCATCTTCTAATGTGTTTGTAGAGGTAAATTTGAGATGTATAGGAAAGTGAACAGCAGGAGCAGGAAACCATGTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354043 True 4983 lncRNA 0.41 2 20724944 20730010
TU354044 False 1594 lncRNA 0.42 2 20705477 20714490

Neighbor

gene id symbol gene type direction distance location
LOC113524752 NA coding downstream 52265 20613722 ~ 20653212 (-)
LOC113524753 NA coding downstream 94208 20593441 ~ 20611269 (-)
LOC117599679 LOC108258211 coding downstream 113691 20584667 ~ 20591786 (-)
LOC113524741 LOC108270747,LOC108263642,LOC108273692,LOC108270753,LOC108261406,LOC108257668,LOC108261292 coding downstream 130223 20566946 ~ 20575254 (-)
LOC113524747 LOC108258215 coding downstream 268003 20425285 ~ 20437474 (-)
LOC113524743 LOC108258194 coding upstream 12060 20742070 ~ 20750140 (-)
trnae-uuc_17 NA coding upstream 20490 20750500 ~ 20750571 (-)
LOC117595662 LOC108258028 coding upstream 255178 20985188 ~ 20990671 (-)
LOC113525589 LOC108258028 coding upstream 265791 20995801 ~ 20999074 (-)
LOC113524825 LOC108270753,LOC108273546,LOC108257668,LOC108261406,LOC108264971,LOC108270747,LOC108273692,LOC108273691,LOC108261167 coding upstream 363467 21093477 ~ 21112429 (-)
G298878 NA non-coding downstream 27967 20676043 ~ 20677510 (-)
LOC117599711 NA non-coding downstream 59086 20645389 ~ 20646391 (-)
G298823 NA non-coding downstream 204337 20492009 ~ 20501140 (-)
G298801 NA non-coding downstream 275269 20429514 ~ 20430208 (-)
G298794 NA non-coding downstream 314760 20389084 ~ 20390717 (-)
G298906 flrt2,LOC108258011 non-coding upstream 24962 20754972 ~ 20888652 (-)
LOC113525588 NA non-coding upstream 202593 20932603 ~ 20947358 (-)
G298934 NA non-coding upstream 219832 20949842 ~ 20950072 (-)
trnai-uau_9 NA non-coding upstream 227621 20957631 ~ 20957723 (-)
trnar-ucu_11 NA non-coding upstream 229486 20959496 ~ 20959588 (-)
G298875 NA other downstream 40937 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 263185 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 326572 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 327101 20378305 ~ 20378376 (-)
trnah-gug_24 NA other downstream 335198 20370208 ~ 20370279 (-)
G299022 NA other upstream 342916 21072926 ~ 21073676 (-)
LOC117599725 NA other upstream 862264 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 1242071 21972081 ~ 22067610 (-)
G299449 NA other upstream 1266104 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 1294606 22024616 ~ 22032359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G98005 LOC103373964,LOC107081966 unknown NC_053120.1 CM020917.1 24749001 ~ 24755967 (-)
striped catfish (Pangasianodon hypophthalmus) G111911 NA non-coding NC_047601.1 CM018547.1 9255722 ~ 9257981 (-)
bowfin (Amia calva) G100241 NA non-coding CM030132.1 CM030132.1 19726572 ~ 19782763 (+)