G299353 (LOC108265589)


Basic Information

Item Value
gene id G299353
gene name LOC108265589
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21692473 ~ 21695643 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU354649
gagtgagtgtgtatgagtgtgtgtgagtgagtgagtgagtgtgtgtgtgtgtatgagtgtgtgtgtgtatgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtatgagtggagtgtgtgtatgtgtgtcagtgtgtgtatgagtgtgtgtgtgtgtgtgtgagtgagtgagtgagtgtgtgtgtcactgacAGCGTGTCCCTGTCTGTTGGTTGTGTATTAGATGCTGGAGGTCCTCTGCAGAACGGAGACATCGAGgaggtaGCGGGgcgtgtgtgtattgtgtgtccGTGGCATAAATAtaagatcagtgtgtgtgatggtgaaggTGTGTACCAGGCTGTGGATCCTTCAGTGAAGCCTCTGAAACCACGCTGGTGCTCTAAAGGGGTCAAACAGAGAGTTCACAAGGtcacagaggtcagaggtcgcGTGTACATCACCCTCAACACTTCACCTGAACACCTTGAGTCCGACCAGTACCAGACCTCGAAATACAGAGACGCACTgcacaggaacaggaagtgacatcacaggAACTGGTTAACTGGACGAGGATCAGATCACTGTTCTACGTCTTTTTCCTTTAACGTCAGCGTTTATTCTCATCACTGCTGCTTTACTGACAACTGCAGTCTGATCACCATCCTCACATTACAATCCTGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU354649 True 676 lncRNA 0.49 4 21692473 21695643

Neighbor

gene id symbol gene type direction distance location
LOC113525508 NA coding downstream 3165 21685094 ~ 21689308 (-)
crip2l LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639 coding downstream 51480 21625860 ~ 21640993 (-)
LOC117599724 NA coding downstream 114204 21574583 ~ 21578269 (-)
LOC117599736 NA coding downstream 117921 21572325 ~ 21574552 (-)
LOC113524833 ddhd1,LOC108412684 coding downstream 324928 21353629 ~ 21367545 (-)
LOC113525042 NA coding upstream 28092 21723735 ~ 21728414 (-)
trnav-uac_10 NA coding upstream 36546 21732189 ~ 21732261 (-)
nt5c1bb LOC108257680,LOC102795473,LOC100693789,LOC102194616,LOC101069542,LOC101468566 coding upstream 49293 21744936 ~ 21750986 (-)
kcnk5b LOC108257676 coding upstream 66923 21762566 ~ 21772675 (-)
LOC117599742 NA non-coding downstream 68174 21623236 ~ 21624299 (-)
LOC117599744 NA non-coding downstream 94419 21596982 ~ 21598054 (-)
G299317 NA non-coding downstream 100026 21572310 ~ 21592447 (-)
LOC117599743 NA non-coding downstream 190761 21500657 ~ 21501712 (-)
G299070 NA non-coding downstream 412682 21259456 ~ 21279791 (-)
G299359 NA non-coding upstream 19260 21714903 ~ 21716462 (-)
G299366 NA non-coding upstream 47536 21743179 ~ 21744770 (-)
G299375 NA non-coding upstream 112757 21808400 ~ 21817234 (-)
G299420 NA non-coding upstream 195172 21890815 ~ 21891501 (-)
G299446 LOC108257678 non-coding upstream 270713 21966356 ~ 21967396 (-)
LOC117599725 NA other downstream 95505 21592274 ~ 21596968 (-)
G299022 NA other downstream 618797 21072926 ~ 21073676 (-)
G298875 NA other downstream 1027933 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 1250181 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 1313568 20378834 ~ 20378905 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 276438 21972081 ~ 22067610 (-)
G299449 NA other upstream 300471 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 328973 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 374285 22069928 ~ 22082320 (-)

Expression


Co-expression Network