LOC113524818 (LOC108257685)


Basic Information

Item Value
gene id LOC113524818
gene name LOC108257685
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21343168 ~ 21352272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911172.2
acacacacacacacacacacacacacgcacacacacacacacacagagagagatggctGAGTTTTATTCGAAGCAAATAAACTAAAGCAAATCGTCTGTGTGAGAACAGAAGCTGAGGAGCACAAACAACCAGCAGCTGCAGGTTCTGATGATGACGATCCAGTCAGCGATTAGCAGAGAGATCTTCACTCCACACCACGAGAAGTTATTAACAGTGATTgaagtgaggaagaggaggagaagaagactGACCTTCATTCCGGCGGGGCGTAAGAAGGATTACGTCACCTTCCTCTGTCTGTCAGTGACGAATAAAAAGCCGACTCAAGTTTTTATCACCAAAGTGAAGCAGTTTGAATTTTCTCAACAATTTGAGAAACGCTCACACTGGAGTTTGGATCAGCTACGTCGCGTCGACGGCATTGACCCCGACAAggacAGTCCAGAGTTTGACCTGGTGTTCGATCACGGAACTGATCAATGGGTCGCCACATCATCAGCGGAGAAATGCATGTTCATTCAGATCCTCTATCATCTCTGCCAACATTACTGGGAGAGTCAGACTGAGCCGAGTGTCAAAGCGCCCCCTGTGGGTCAGAAACCCACCTCCACTTCCACCCCGACCTCCACCTCTGCCCCCACCTCCACTTCCTCCACCCCTGTCTCCACCTCCACTGAACAAACAACCGTCctggagaaaaagaagaagaaaagtcgTGATGCACCACGTCCCACTGAATTCGTTAACTGCCAGTCCAAATTACTGGGAGATGCCTGCTCACTAAACATCGTCATCTACCGCTGTAAGATCTTCCTGCACAGAATGAGGAACTCCATGACCTCTGCTCAAGAACCAAGTCACAGTCAgaaagCTCCTCCTGTGAAAGTGGGCACGGCTAGCTCCTCCCCCCCAGCGCAGAGCATCATGGGAGCAGTGAGTCGGAGGGCGAGTCAGGTGTTCAGCGAGCGCGGCGATGTTAAACAGCtcagtgaaaatgtacaaaagCTTGCCCTGAAACATCGGGATTAAAATAATCACAGTCCATCGTCTCCTCTGTGTGAGCTTAAAgataacaacaaaacacaaaaaagatgATTGGTTTATTTATGCAGTggctttatcacacacacacacacacacacacacacacacacacacacacgcacacacacacagagtttacaGATGCTTATAATAATGCTTTTTCGCTCAGGATGCTTTGTTTGAGCCACTAGAGGGCGATGCTGAGTTCTGAAAACACTGAGGTTCACTTTACGCATCTTAaatgcattttgtgtatttttatatatttttttatgttgtaacAGTAACATAAATAGACAGATGTTACACACATGGACATGCGTATAAATGCTAATaacatgtttaataatataataatagacGCCGCAGACACACAGAGGATCATGACTCACTTTTTTTtaggaaattattttattaaatattataataaaatataattattttattaatattagtttAAAGTATTTTACACAATTGGTTAatttacactctcagaaaaaaaaaaaaagatttcaatgTTAAAAAACTTCAGTATTGTTAGTTAGAGAAACTCAAAGCtgtagtttatatttaatacacttTTAAAGTATATAACTGAACATTATAGATCAAAGTTTTACCTTTAAAGAAGTATTTAAACTGGAATAAGGATCTTCTCACAAcatgatactaccaccaccatgcttcacactGGGGCAGTATTGGGTTTCCACCAAACTAAACACTTTATGCCGAGAAGAAAACTTTCACATTTTGTGCTTTTGCCTCATTAATAGCAAGAAAACCTAATTATCATAtcatagaatttttaaaaatgtatttatgtatttatttatcgcTACTTAAAATCTCTTTAATGAAGAATGAGAAGCATTCATCAGTCACTATTGATAAATTAAATTTCTCCACATCATTCCTCATTAGTACAACATTTCAAAGGAGGATTATAAGTGTACAATAATCTCtgtgttaattattaaaaagaaatgaattattaatgttGAATTTTGTTTAATTGGTCTAGAGtcatgtattaataataaataatgtgttaatGACTTTAGTCTACACTGTGGGTTTTATGGTTTATTAAGCAGCACAAGTTTATAAATGATCAAAGAGCCAGagtcggagtgtgtgtgtgtgcttgaatCAGACGTCACAGAGTGTGTATATGACTGAATGTGTGTTGTATAATTGTAATAATCTAAAGGTCTGTGGTTTGTAATTGTTGTCTTTTGTCCTTTATTGTCTTGTCAGTGtctaatttttatacattaaactGAGTTTGACCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911172.2 True 2341 mRNA 0.39 7 21343168 21352272

Neighbor

gene id symbol gene type direction distance location
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding downstream 6229 21333265 ~ 21336939 (-)
kcnk10a LOC108257634,LOC108413877,LOC103032675 coding downstream 95983 21219886 ~ 21247185 (-)
trnae-uuc_18 NA coding downstream 132915 21210182 ~ 21210253 (-)
LOC113524822 LOC108257668,LOC108261406,LOC108270747,LOC108273546,LOC108263642,LOC108274210,LOC108270753 coding downstream 146125 21189423 ~ 21197043 (-)
LOC113524826 LOC108270753,LOC108273691,LOC108261257,LOC108257668,LOC108260129 coding downstream 171451 21135577 ~ 21171717 (-)
LOC113524833 ddhd1,LOC108412684 coding upstream 1357 21353629 ~ 21367545 (-)
LOC117599736 NA coding upstream 220053 21572325 ~ 21574552 (-)
LOC117599724 NA coding upstream 222311 21574583 ~ 21578269 (-)
crip2l LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639 coding upstream 273588 21625860 ~ 21640993 (-)
LOC113525508 NA coding upstream 332822 21685094 ~ 21689308 (-)
G299070 NA non-coding downstream 63377 21259456 ~ 21279791 (-)
LOC117599741 LOC108263642 non-coding downstream 157536 21181940 ~ 21185632 (-)
G299032 NA non-coding downstream 211166 21115632 ~ 21132002 (-)
G299026 NA non-coding downstream 260342 21082521 ~ 21082826 (-)
G299019 NA non-coding downstream 272057 21070837 ~ 21071111 (-)
LOC117599743 NA non-coding upstream 148385 21500657 ~ 21501712 (-)
G299317 NA non-coding upstream 220038 21572310 ~ 21592447 (-)
LOC117599744 NA non-coding upstream 244710 21596982 ~ 21598054 (-)
LOC117599742 NA non-coding upstream 270964 21623236 ~ 21624299 (-)
G299353 LOC108265589 non-coding upstream 340201 21692473 ~ 21695643 (-)
G299022 NA other downstream 269492 21072926 ~ 21073676 (-)
G298875 NA other downstream 678628 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 900876 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 964263 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 964792 20378305 ~ 20378376 (-)
LOC117599725 NA other upstream 240002 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 619809 21972081 ~ 22067610 (-)
G299449 NA other upstream 643842 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 672344 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 717656 22069928 ~ 22082320 (-)

Expression


Co-expression Network