LOC113524833 (ddhd1,LOC108412684)


Basic Information

Item Value
gene id LOC113524833
gene name ddhd1,LOC108412684
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 21353629 ~ 21367545 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911187.2
cattaaaatacattcatttcTGTTAACACAAACATATTCACTTCAGGATAAATAGCcagtaatgttttctttaaatgggACGTTTCACATCGAGTGTCGCTGCAGTTCCACCAGTCACCAGCAGGTGGCTTCAGTCCCACATGAGAAACCCTACACCCTGCTCTTACTACCGGGGAGTGTGGAATAGACGcgcatgaaaacacacacacacacacacacacacacacacacgctgtgtaTGCGGATGCGGATGTGTGCAgtcagtgtgttggtgttaGAGCCGCAGGATGAAACACATGCCGAGTTACAGGCGCGTGCAGGTGAACAGGTAGAGTAAAGACAGCTGAAGGGTTTCATTTAAGCGCAGTGAGATGCGGCGGTGATTATTAAGTCGGTGCATggctgcggtgtgtgtgtgtgtgtgtaggtgtgtgtgaatcCAGTCGGTAAAACTGCACACATGAGCGATTTTACAGGCGCACCGGGGAGTCGTTTCTGCGCCTCGGACTGGGCGGTGAGTGATGCGCGCGCGGACGTGATGGACACACACAGGGACGTGAtggacacacacagggacatgctgttaggCCTCGCTGAGGATGCTGCCTACTCGGACCCGGACTATCTGGACCCGAACTACACGGGAGACGGAGACGAACCGACGGCGAGGACGCGCCCGCGCCAGCGCCCGAGCACGCGCAGCCGGTCCGGAGAGGTGACGGAGCTCGAGGCGCAGGAAGTGCGCTGGTTCTACAGAGAGGACAAGAGGAACTGGAAGCCCTTTGTGGGACACGACTCTCTGAAGATCGAGCTGGCTTACCGGACACTGTGCGCGCTCAGGGATGCGCGTGAGGGCGTGTTTGAGCCggaggacagtgtgtgtgtgtgtgagtgtgtgtgtgagtgtgagtgtgtgtgtaaggacgCGGGTGTGGACGCGGTGTGTGTGCGCGGAGGACTGTACGAGGTGGATGTGAAGGAGAAGGAGTGTTATCCGGTCTACTGGAACCagcagGAGCGTATCCCGGTGATGAGAGCTCAGTGGTTTACAGACGGGACGTGGCTGCCGCTGGACGAGGAGGACGGAGACCTGATCGAACTGGAGCATTTAGCAAAATTTAGGGGACATCGACTAGAAGATTCCCTCGAAACAGAGGGAGTGAGCACAGCGCCGGAGAGCAAGGAGGtggtgCACAGTGTGAAGTTGAGTCGCAGCCATGTAGATTGGCACAGTGTGGATGAAGTTTATCTGTACAGCGACGCCACAACGTCCAAAATCGCTCGCACCGTCACACAGAAACTCGGCTTCTCCAAGGcctcCAGCAGCGGGACGCGTCTCCATCGTGGTTATGTGGAGGAGGCGGCTCTGGAAGACACGCCCCCTGCCGCCACCCACATTGTGTTTGTGGTGCatgggattggtcagaaaatGGACCAGGGGCGGATCATCAGGAACACCAGCATGATGCGTGATGCTGCGAGGAAAATGGCGGAGAAACATTTTTCAGACAGAACGACGGAGCACGTGGAGTTCCTGCCTGTGGAGTGGAGATCGAAACTCTCTCTGGATGGAGacACAGTGGACACGATCACGCCGGATAAAGTGCGAGGACTGAGAGACATGTTGAACAGCAGCGCTATGGACATCATGTACTACACCAGTCCACTGTACAGGGACGAGatAACGCGAGGtctgacctcagagctgaatcGTCTCTACACGCTGTTCTGTTCCCGTAACCCCGAGTTCGAGGAGAAGGGCCGAGTGTCTATCGTCTCACACTCGCTCGGCTGCGTCATCACCTACGACATCATCACTGGCTGGGACCCCGTCCGCTTACATCATCAGGAAGCGCCGGTCGCCGTGGAGACGGACCCTCTGTGGCGCAGCAGCCATGAACAGAGACTGTTGGAGGAGCTTCAGCTCACACGCATGAGGTTAAGGGATTTGGAGGATCAGTTTCAGAGCCTGAAGTCCTCGAGGAATTCTCCAGCATTAAAATtcaaggtggagaACTTTTTCTGCATGGGTTCTCCGCTGGCCGTGTTCTTGGCTCTGCGTGGGGTTCGTCCCAGTTCCTGCAGGACTCAGAACCACATCCTGCCACGCTCCATCTGTTCCAGACTCTTCAACATCTTCCACCCCACAGACCCGGTGGCGTACAGACTGGAGCCTCTGATCCTGAAACACTACAGTAACGTCGCTCCTGTGCAGATTCACTGgtaCAACACCAGCAGCCCCACCCCATATGATGACATGCGGCCGGTGTTTCTGACCCCTctgaaggagtgtgtgtctcaATCAGAGGGCGAAAACACACCGAGTCCCTGTACATCCCCCCCGCAGCAGCGCAGAATGGGAGAATCCATCACCAACCTGGGGAGGGCTAGCATCATGGgagcgGCGAGCATCGGTAAAGGTATTGGTGGAATCCTGTTTTCCCGTTTCTCCCGATCGAGTGGACAAGTGGGCGGAGCCGAAGAGGAGCCAATCAACTCGGAGGTGGGGCCATATGAGACAGAGGGTGGGGCTATCGGGGAGGAGGGTGGAGTCACGGAAACAGAGGACAAGATGGAGGAgaagacggagagagagaatggcATGTCCCAGTCCACGTCCACCGTCATGGACAACTCTACACTCTtggagcTGGATCGGCGTATTGACTTTGAGCTGAGGGAGGGGCTGGTGGAGAGCCGCTATTGGTCAGCGGTGACATCACACACAGGCTATTGGTGCTCGTACGACGTGGCTCTGTTTCTGCTGACGTTCATGTACGGAGAGGAAACGACGCATGGAGAAGGGGAAGACACTGCTGagtcataacacacacacacacacacacacacacacacacacacacacacacacacaaggcatgTGTCGATGTTACATTCCCCTTCTTACGTTCAGCTACAGTTTGCTAAACTCACCAGCTAGGATAAGTCATCCTTTTAGCTAGTGCACAAGCTGCTACAACACTGTTTACAATCGGAGCTGTGTTGTAGCTAAGCTAACAATCTAGCGAGTGATGATGAGTAAACAAATCTGCACGTCGGTTTAACATTTTATCCCAGTCTACAATATTATCGCGGTCTTGTAGTTAAGATGAATAGCTGCTCCCACTGGCCGTGTTTCAACCATAAACAAACGTCAGCTGTGTTTCATATAGAATTCAGCTTTAAAcctacactctcatacacacacacacacacacacacattaacatgtgGCTAATGTTTTATCACAGTGTGAATTAAAGCTAGAAAACGTACATTATTGATCAGTCTttcagtaaagttgtgtgtaaaagttttCATGTCCAAACGGAACTAAACATTCCACCAGATTTATAAAAGTTTATGAATTTCTTCGTACTTGTGTGAATGTGCTGATGAAAAACACCAATCAGCTGTTTTTTCCAAACATGTTCATGATGAGGCTGATTtccatttagccacgcccacaaaacaccataaaaggcaaagagagctcaaaaaaggcaaaatggtgactaaacagtgaaagagagcCTCCTGAGCGTGACGTGTATTAAATCTTCcactaatgcagctcagccactgcagcgcatcCGCTACCCGAGACACACACGAACCCTTTCAGCTTTTATAgagtgccattacttttgtcctcaTTGAAGCGCTAGTCGAATTTGAAGATGATGAATTGAGGCTCACATTAGTGAATCTACTTGTACAGAAACTTAAGCTAATTTGTAAGACACCATTTTACAAAAGATTTGCGTAAATGCTCCTGGGAACGAGTTACGAATAAATGAACTCATATACAGAGCGAGACGATGAAGCCCAGTGTTCCACACAACACGCTCACACGAACACCTTCTGTCGAACATCAGCGATCAGGACACGCCCCCTGGCACCAGATAGCTGATGGTTTAACGTAGGTGGTGCATGTAAAGGCACAATATCATTGGCTAAGGCTAACTGCAGTGctgcgctgtgattggtcagtgtgtaTTAATGGGAATATTAAAGcatgtttatgtgtattttcACCCTCgtgtttatttcatattcacCTTCAGAGAAACTTCACATTCAATTCACTCTTACATGAATGTTACTTATTTGtgatttatgtaaataaatataaatttacgTAAAATAATTAGAGCTTTATATCTGAGTTGTTGAGCTGTAACTTGTTTCTGTATCAGAGCTGATCTTTTAATGTTTACATTCAACTCTGCTGGGAAGAAAACTGGAACCGTAGTGAATGTTAACtgttcaaaatgtaaaaaattgccaaatatatacgtatatacaTGTTCTGTACCTGGTTTCAAGAGTGTTGTTGTTTGTCCTGATGTCATAGACACTGTTCATTGGCTGAAATCACTCACATGACCACCTACACTAAAGATGACATCACTGGGGTGACCACACCCCCAAAAacctgaaataaacacacacacacacacattaaaaagacTTGACACTGATTTCAGCTAATGACGTGTTTCAATAATTATTTgttagtatgtttttttttcctgcacacAGAAAGCCTTATCAGATTTCTACGTTTAATTAGAATTTCTGTAAGTAAACAGATTGATGCTGAAGTTTGTTGAAGGAAGTCACTGATATGTTCAGCACTCAGTACAtcactactgaaaaaaaaacgttcagtttgttgtattttgtttgtggtgcagtgtttttttttaaacagttaataatctGTACAtctttatacacattatactctgtgtgtgtgtgtgtgtgtgtgtgttctcacacactcatttctccTCTGCTTGCTATCACATTAACTCATCTCAgtgttattttacacttttgtgTTTCATATACTTTAAATGTTCTGTATGTTTTGTGCATCTAAAAACGTGCTCATGATTAAATTTGTAgcaaaaatgcaataaaacaagCGAAAATGTG

Function

symbol description
ddhd1 Predicted to enable phospholipase activity. Acts upstream of or within positive regulation of mitochondrial fission. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Implicated in hereditary spastic paraplegia 28.

GO: NA

KEGG:

id description
K13619 DDHD1; phospholipase DDHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911187.2 True 4944 mRNA 0.48 14 21353629 21367545

Neighbor

gene id symbol gene type direction distance location
LOC113524818 LOC108257685 coding downstream 1357 21343168 ~ 21352272 (-)
LOC113524817 ACTC1,actc1,zgc:86709,LOC108414322,LOC106531354,LOC102689871 coding downstream 16690 21333265 ~ 21336939 (-)
kcnk10a LOC108257634,LOC108413877,LOC103032675 coding downstream 106444 21219886 ~ 21247185 (-)
trnae-uuc_18 NA coding downstream 143376 21210182 ~ 21210253 (-)
LOC113524822 LOC108257668,LOC108261406,LOC108270747,LOC108273546,LOC108263642,LOC108274210,LOC108270753 coding downstream 156586 21189423 ~ 21197043 (-)
LOC117599736 NA coding upstream 204780 21572325 ~ 21574552 (-)
LOC117599724 NA coding upstream 207038 21574583 ~ 21578269 (-)
crip2l LOC108257687,LOC108412595,LOC107582101,LOC100704743,LOC107695994,LOC107729083,LOC101072639 coding upstream 258315 21625860 ~ 21640993 (-)
LOC113525508 NA coding upstream 317549 21685094 ~ 21689308 (-)
LOC113525042 NA coding upstream 356190 21723735 ~ 21728414 (-)
G299070 NA non-coding downstream 73838 21259456 ~ 21279791 (-)
LOC117599741 LOC108263642 non-coding downstream 167997 21181940 ~ 21185632 (-)
G299032 NA non-coding downstream 221627 21115632 ~ 21132002 (-)
G299026 NA non-coding downstream 270803 21082521 ~ 21082826 (-)
G299019 NA non-coding downstream 282518 21070837 ~ 21071111 (-)
LOC117599743 NA non-coding upstream 133112 21500657 ~ 21501712 (-)
G299317 NA non-coding upstream 204765 21572310 ~ 21592447 (-)
LOC117599744 NA non-coding upstream 229437 21596982 ~ 21598054 (-)
LOC117599742 NA non-coding upstream 255691 21623236 ~ 21624299 (-)
G299353 LOC108265589 non-coding upstream 324928 21692473 ~ 21695643 (-)
G299022 NA other downstream 279953 21072926 ~ 21073676 (-)
G298875 NA other downstream 689089 20655999 ~ 20664540 (-)
LOC117599698 NA other downstream 911337 20439620 ~ 20442292 (-)
trnah-gug_25 NA other downstream 974724 20378834 ~ 20378905 (-)
trnae-uuc_13 NA other downstream 975253 20378305 ~ 20378376 (-)
LOC117599725 NA other upstream 224729 21592274 ~ 21596968 (-)
srsf5a srsf5,srsf5a,LOC107553206,LOC108411053,LOC107683426,LOC107736490,LOC107602962 other upstream 604536 21972081 ~ 22067610 (-)
G299449 NA other upstream 628569 21996114 ~ 22000833 (-)
LOC113525507 lipg other upstream 657071 22024616 ~ 22032359 (-)
LOC113541916 LOC108262998,LOC794838,LOC105890990,LOC107705434,LOC107602927,LOC108232058 other upstream 702383 22069928 ~ 22082320 (-)

Expression


Co-expression Network