LOC113525267


Basic Information

Item Value
gene id LOC113525267
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 859667 ~ 861490 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911740.2
tagcCTTGTGTCTCCTCCTGCTTCTGTGCTGATGGGTATTTAATGCCTCACTCTGAGGTCCTTCACTCATTATTTACCTCATCACACTCTTCCTCACCTTCACGATGAAGCTGATCATCCTAGGGTTCGTGCTGCAGGCATTTGGGTACCTGGCTAATGGAAGGGTGGTAGAGTCTTTTAAGGATTCATGTCCTGATTTCTTCATTGAAGATCCATCAGACCAAAATGTCCACTACCCTCCCACTGTTCTTCATGATAGCCAAAATCCAAAGAGATACCAGCAGATTTGTCAGCAATGGAGCAATTCATACAGATACGCCACTCTGTATGACACAAAGTGCAGGATCCCAGTGTACTCTGCTTATTACTATGTAGGATATCACAAGGTAGACAAAGCTGAGTGGAAGATTGAGCCACAGCTTGATGACCCCAATCTAGGGCCTGAGATGGCACGAGAAAACACCGTAGAGACAAAAGACAAAGGCAAAAACCAGGCACTGTATGATGACTATGCATCTCATGCAAAAGATTACACCAGGGGCCACCTTTACCCACGCTGCCACAATAATGATCAGGACTGTGCCATtgccacctacacacacaccaatgccGTACCACAATCTCAAGAAGACAACAATGTGTGGGCTCACAAGGTGGAGCAGAAGATGGAGAAGCTCATACAGGACAACTGTGACAAGGGCTTTGCACATGTTGTGACTGGAGCGGTGCCTGGCCAGTCCTGGCTGCAGATCAAGAGAGATAACATCCCTGTCGAAGAAGGAGTCAACATCCCTGAACATTTCTGGACTGCCTACTGCTGccatgacaaaaaaacaaatgctcTCCTGTCAGATGCCTGGCTGGCCCGCAGAAACCCTAAAGGACTGGTGGTGCGGAAGAGGACGGTGAAGCAGCTGGAGGAGGAGCTCACCCCTCTCTATGGAAACCCAGAAGGAGGATTCAGCATGTTTGGAGGGTTGTGCCAAGGGAGTATCATAAGCAGATTTTATTATGCTCTGGTTGACCTTTGTTTTGACTTTTCTAGTAACTAAACATGAACCCTCTACTCTTGTCCAAGTGTTATACTTAGCAAATCACAGTTGTCTCTGACTGAGGTTTTGTTCCTGCACCTCTTATAGCAACCTCAATCTCAGGGGTCATCCCTTGTTGATTACTGTCCTGACTGATTTATGTGCTATTTGATTTgatgataataattataataataatgtattgttTATAAGTGCACTATCCTgggtcacccagatgaggatgacttcccttttgagtctggttcctctcaaggtttcttcctcatatcatatcatatctcagggagtttttcct

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911740.2 True 1347 mRNA 0.46 2 859667 861490

Neighbor

gene id symbol gene type direction distance location
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 26842 832360 ~ 832825 (+)
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 27821 831420 ~ 831846 (+)
LOC117599755 h2afx,LOC107386469,LOC106516344,LOC100693699,LOC101160258,LOC107677420 coding upstream 33504 824677 ~ 826163 (+)
LOC117599760 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 40244 818996 ~ 819423 (+)
LOC117599756 h2afx,LOC107386469,LOC106516344,LOC107677420,LOC100693699,LOC108260105,LOC106527800 coding upstream 46865 812260 ~ 812802 (+)
LOC117599763 NA coding downstream 35510 897000 ~ 897286 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding downstream 153394 1014884 ~ 1036096 (+)
LOC117599792 NA coding downstream 342023 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 432292 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 479018 1340508 ~ 1344631 (+)
G287627 NA non-coding upstream 57143 762431 ~ 802524 (+)
LOC113525268 NA non-coding upstream 391263 454598 ~ 468404 (+)
LOC117599767 NA non-coding upstream 468465 388695 ~ 391202 (+)
LOC117599768 NA non-coding upstream 704072 155007 ~ 155595 (+)
LOC117599770 NA non-coding upstream 705104 154129 ~ 154563 (+)
LOC117599769 NA non-coding downstream 64743 926233 ~ 926639 (+)
G287814 NA non-coding downstream 128720 990210 ~ 990435 (+)
G287817 NA non-coding downstream 144177 1005667 ~ 1007006 (+)
G287872 NA non-coding downstream 322593 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 380371 1241861 ~ 1242067 (+)
G287892 NA other downstream 381567 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 397686 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 496696 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 1134630 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1271668 2133158 ~ 2142181 (+)

Expression


Co-expression Network