scara3 (scara3)


Basic Information

Item Value
gene id scara3
gene name scara3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14645633 ~ 14659946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922601.2
tccttctctcactgagaaacacacactccgACCTCTGTTGTGTCTCTCCACACTGCACATGTTTCTTAGCTCCTTCTAGCTCTGCGGAAAAGAGAGGCATGTTCCGGAGCGGCTGCTACATATGCACACTTGCTTAAACATGTAGCGCAACTAGCTGCTCAAATCATCAAGTGAGCTTCGATTACAATTAAGTGGACTTGTTCTAAACAAGGATACTTATTTAAGACACGCATGCAGCTGTCTACTTAAACGGACAGTGGAGGACCTGTGAAGAGAGACAGTTCTCAAGACTACCTGTTCATCACCATTCCTTCTGAAACATCTTTACACAACAAATATGAAAGAAAGTTATTGTGGCTATGAAAACCAGCTCTTCAAAGAGGAGGACCTGAccggagaggaggaggagatgccTCCCTTCAGAGGAAGAACCCGAGGAGGTTGTGTGAAATGCCAGCATACTCGTTCTCTCCAGCTGGCGGTCAGAGTTCTCTACGGCTTCTTCGCCTTCATAGTCATCACTTTGGCAGTCCTGGCTTCTTTGGTGTTTAGGAAGATTGACAGCTTATCTGAAGAGGAATCGCTTTATCATAAAAAGATGACCAAGGGCCAGGGGAGTACTCAAGATCTCAGCACCATGAACTGTACAGAATGCTACAATGCAGTTCACTTCCGGGAAGAGATCACTAGGCTCAAGAAGGAATTTGAAGACCTCCAAAAGATGATTGTGGGTCAAGAGCAGTTACTGGACCAGACCACTCAATCCCAAAACACTCTAACACAGTCCAATAACAGGATGATGAGAGATGTCCAAGCTTATGGGATTACTATTAAACGAATAAACCAATCTCTTGAGCAGTACCTGAATCAGGTAAATGGATGGCAGGCTGTTATCAACGAGACTGATCAGGGCATGAAGACCTTGGTGCAAGACCAGTATGATTTGAAGGCTACTGTGCAACAGGTCAACAGTACTGTTGCACTTAGTGCCTTGTGGATAAATGCTCTTCAGAGGAAGGCAGAAGAAGAGGTATTGGTGCTAGAGAAAATGACCAAAGACTGGCAGAACTACAGCAGAACGCTTAGTGCACTCAAGTCCAATTCTAGTGCCAATGTCCAAACAATGCGAACCATCCAGAGTGGCATCTCTGCCACACATCAGAGAATCAGCATGAGCTCAGATATGGTGCAAGACCTTACGTTACAGGTCATGAACCTGCAGATACAGCTGGACAATGTGTCTTCTTACATTGATgagcatgaggagaacatgcatgACCACCAGTATCATGCCAAGTACTATGAAAATAGGACTGGGGAAAGGTTTGTGACATTGGACACAAGAATGGGTTCCATTGAACTGGAGATTGAGACAATTGCCTCCAGCATTAATGCAACAGTCAGCCATGTTCAGAGCATGTACAAATACATCAACATGGAGAGCTCATCTTGCCAGTCAAAGCTGGGCAGCCACACAGAGGACTTACAGAATTTAAACAATACTGTTTTGCTTCTGCTAAACCTCGCTGATTCCTTGAGATCACAATATATGATGCTTAATTTACGTCTTGATGTGGATATGAGGAACATCTCTATGGTTATGGAGGAGATGAAGCTGGTGGACACCACACATGCTCAGCTGATCCAGAACTTCACCATTGTGAAAGGTGCTCCTGGTCCACCAGGTCCAAAGGGGAACAGGGGTGAAACAGGACCAACAGGTCCTACAGGATCAACAGGGATCAAGGGAGACAAGGGACGTCCAGGTGTCCCTGGTCCTGCAGGGCCAAAGGGTTTTGTAGGACCTAAAGGAGCTCAAGGGGAACCTGGATCTTCTGGAGTGAAAGGAAGCCAAGGGCTTAAAGGAGCCAAAGGGTCTTTAGGACAACCAGGACCTCGAGGTGAAAAGGGGCAGAAGGGTGACATGGGAGTTGCAGGCAAAGATGGATTGCAAGGGCCAAGAGGACCATCAGGAATCCAGGGTCAAGCAGGACTCCCTGGTGTACATGGGATTCCTGGACCTAGAGGAAAACCTGGACCTGTTGGCCCACCTGGCCCACGTGGACCTCCTGGACCACCAGGGAACTCCACCTTGGGATGAGAAATGTTTAGACCACTCCGTTATTAAAATTGTAGAACCTTGTAGCAGGATATCTCATAAACCACCTTCCTGGATACACAACAATGTTACTGAGTATGGATGGATAAAATCAACTATGAAGTAACTACAGTTGCATACATTCCCTGAAAATGTCACCTTAAAAATCCTTATCTTCAGTATACATTCCTCAGGCTTTAAACTGCACATAAATACCCAATATCTGACATTCATCACATGAACGTGCACTTGGCAAAATGGCGGTTACCTTGTACTAATGGTGCAAGACTATGTAGGACTACTACAGCACATAGCTTTAAATTTTGCCTAACATTTTGGACTTTCACTTTTTTATGGTCCAATAGATGCTTTGAGAATGTCTCTGAATGATGGAATGGTATGTTTTGGTATTTGTGATGgccttttatttgtttttcattaagaATCCCTTCACATATCATGACAACAAATGTTAAGGCACTTTAAATGTTAATACTATTTTTAATCAAGCCATTATTTTAGAATTAGATCTATTTTTGTATATACACCATGGCGTATTCGGAGCAGGTACTCTGAACAAGATATAAGATCATGAAATTGTgagatttttaattattaatcctGCGACAAAACTATTCCAAACAAAAGTGTAATATACAGTGCACACAATAAGAAAATGCATACCACAGCATCAATACTACATTTTTAATGCACACTTTGCTGATTTTACATAtgcaaaaaatgttctttttttattggtaTAAGGAAAAATCATAGGTAACATATTTTATGCTTTTGCGCAGCATTATATATTGTCTCATAAGAGTTTAATTTTGACAGGAGTGTTTTTACACTgtgttaaagaaataaaaccatttcttgAAAGAAATCACAATTCCAGGATAATTCACCCAGTATTTTACACTGTAGAATGTATAAAACTGCTTTAACCAGCATCATCTATGCATATTTAAATGTACAGCAATGTAAATTTAATATATGCTTAATTTTTGCAAAGATCAAGGACTTCTGAAAGTGTTGAA

Function

symbol description
scara3 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human SCARA3 (scavenger receptor class A member 3).

NR:

description
scavenger receptor class A member 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922601.2 True 3141 mRNA 0.42 7 14645633 14659946

Neighbor

gene id symbol gene type direction distance location
reps1 reps1,LOC107727647 coding upstream 24735 14597191 ~ 14620898 (+)
papola papola coding upstream 222461 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 265059 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 266774 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 267529 14378023 ~ 14378104 (+)
esco2 esco2 coding downstream 37335 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 177998 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 655107 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 676238 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 825145 15485091 ~ 15487397 (+)
G295787 NA non-coding upstream 14473 14627102 ~ 14631160 (+)
G295766 NA non-coding upstream 70838 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 244158 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 246254 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 247701 14397851 ~ 14397932 (+)
G295818 NA non-coding downstream 4147 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 5586 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 58339 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 115777 14775723 ~ 14775932 (+)
G295917 NA non-coding downstream 183104 14843050 ~ 14870272 (+)
trnas-gcu_16 NA other upstream 258076 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 260128 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 261246 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 262881 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 340942 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 463821 15123767 ~ 15189612 (+)
G296138 NA other downstream 563700 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1506452 16166398 ~ 16180232 (+)
G296562 NA other downstream 1654317 16314263 ~ 16315126 (+)
G296825 NA other downstream 1937204 16597150 ~ 16597787 (+)

Expression


Co-expression Network