emc7 (emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948)


Basic Information

Item Value
gene id emc7
gene name emc7,LOC107549094,LOC107671783,LOC107721381,LOC107756596,LOC107601948
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10374563 ~ 10378224 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922696.2
ATCGCGGAGCACTTCCACTTCCGGTATTAGGACTCCATGCCCTGTGTGAACGCTTACTGCCGAGCAGTCCAGCTGATTCAAGGGTCACTACTATCTACTGAACGATAAAACAAGGCGTTCATCGTGTAGCCGGAGCGATGCGGCATCTTAAAAGAATACTGGACGCATATGTTGTGCTCCAGTCCGCGTTTGTGCTGTCGTGCTGTTTCGCCGAGTCGGAGCCCGGGCCTGGTGCGGGGAATGGAGACCGCTTCAAGATCGAGGGCCGTGCGATTGTCTCGGGAGTGAAAGCGCAGGACTGGGTCTCCTCAGCCCGGGTCCTGGTAGAGGGAGGCGAGTATATCGGATTTCTCAGGACTGATGGGAGTTTCGCTGTGCATGATGTTCCATCTGGATCCTACGTAGTTGAAGTCATGTCTCCATCTTACAAATTCGAGCCAGTCCGAGTGGACATCACCTCTAAAGGGAAAATGAGAGCCCGCGTGGTGAACTACATAAAGACCTCAGAGGTGGTCCGGCAGGCGTACCCCCTCCAGATGAGAGCCACTGGGCCACATTCGTACTTCATGAAGCGAGAGACGTGGGGGTGGACTGATTTCCTCATGAATCCGATGGTCATGATGATGGTCCTTCCTTTACTAATCATCGTTCTGCTTCCAAAAGTGGTCAATACCAACGACCCTGAAATGAGAAAGgaGATGGAGCAGTCCATGAACATGCTGAACCCTAATCCAGAGTTGCCAGATGTCTCAGAGTTCATGACCAAGCTCTTCTCTAAGGGATCCAGCAAGCCAGGGGGAAGCAACAAAGGCAGCAGGAACACAGCACTGAAAAGGAGGTAGTGCTGCTAATGGAGACTGgggtgttttttattattatttttgtgtagaATTGTTTTGTggcctgtttttcatttttatttttcatttgtcacAATAAAACTAACTAACTGTAATGGATAGTGAGCTTGACTTGGCAGGGCTGTATAttatgttcactttttttttttttttttttttttatcagatgcTATATCACCACATGTGACATTTTAATATATCTACCTGTAAACATTTAACACCATTTAGAAAAGCACCGGTAGTTCTATTCACGGTTAGTTGGGCCAAGATCATCAGAAGGGTAATGTATGCTTTTATTGCTGCTGAGGCTGAGATTTCTAAAACAGATCCTCTTCAGGGTTGAGGCTGGATGAAACGTCACTTGAACCCCAACCCAGTTTCCAcaactacttgaaacagagctTTTACTTTGAAATAGTCGGTAATATTGTTTTGAGTTTGTATATGACTGTGAATGAAGATGATGTATGCCTAAAATTTTAGCaaagaaatataaacatatttaaactgAATGCTAATAAATTGTAATGGACATTT

Function

symbol description
emc7 Contributes to membrane insertase activity. Involved in protein insertion into ER membrane by stop-transfer membrane-anchor sequence and tail-anchored membrane protein insertion into ER membrane. Is integral component of endoplasmic reticulum membrane. Part of EMC complex.

NR:

description
C15orf24 homolog precursor

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K23568 EMC7; ER membrane protein complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922696.2 True 1397 mRNA 0.45 5 10374563 10378224

Neighbor

gene id symbol gene type direction distance location
katnbl1 katnbl1 coding upstream 562 10366168 ~ 10374001 (+)
LOC117599727 LOC108261516,LOC108257915 coding upstream 187772 10170792 ~ 10186791 (+)
LOC113545207 LOC108257895 coding upstream 234227 10136989 ~ 10140336 (+)
exoc2 exoc2,LOC107721345,LOC107711641,LOC107665386,LOC107659211 coding upstream 253263 10091369 ~ 10121300 (+)
gmds gmds,LOC107711642 coding upstream 348639 9945790 ~ 10025924 (+)
aven aven coding downstream 5440 10383664 ~ 10412148 (+)
fmn1 fmn1 coding downstream 125110 10503334 ~ 10527440 (+)
ywhaqa ywhaq,LOC107721301,LOC107549101,LOC107756586,LOC107668239 coding downstream 231903 10610127 ~ 10618262 (+)
adam17b LOC108257789,LOC108410928 coding downstream 240992 10619216 ~ 10636229 (+)
asap2b LOC108257785,LOC108410950 coding downstream 270901 10649125 ~ 10671634 (+)
LOC117599717 NA non-coding upstream 163565 10198849 ~ 10210998 (+)
G293110 NA non-coding upstream 310552 10063765 ~ 10064011 (+)
G293095 LOC108257535,LOC107682698 non-coding upstream 336208 10036451 ~ 10038355 (+)
G292929 NA non-coding upstream 505954 9868149 ~ 9868609 (+)
G292754 arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 non-coding upstream 757972 9613425 ~ 9616591 (+)
G293350 NA non-coding downstream 158740 10536964 ~ 10537640 (+)
G293345 NA non-coding downstream 174017 10552241 ~ 10553007 (+)
G293380 NA non-coding downstream 182573 10560797 ~ 10561016 (+)
G293411 NA non-coding downstream 231402 10609626 ~ 10609846 (+)
G293427 cpsf3,LOC107601862,LOC107668237,LOC107693240,LOC107756584,LOC107549104,LOC103459943 non-coding downstream 265276 10643500 ~ 10644152 (+)
LOC117599798 NA other upstream 203824 10158955 ~ 10170739 (+)
G293016 ileu other upstream 423832 9903750 ~ 9950731 (+)
LOC113545247 plcb1,LOC108258091 other upstream 1195390 9074028 ~ 9179173 (+)
G292216 trmt6 other upstream 1377567 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 1840063 8488647 ~ 8534500 (+)
LOC117599733 NA other downstream 303086 10681310 ~ 10682664 (+)
G293528 NA other downstream 640182 11018406 ~ 11024973 (+)
pak6b pak6,LOC108257961,LOC108411385 other downstream 1183198 11561422 ~ 11579249 (+)
rps29 NA other downstream 1345757 11723981 ~ 11725332 (+)
LOC113532225 NA other downstream 2893858 13272082 ~ 13274243 (+)

Expression


Co-expression Network