hddc2 (hddc2)


Basic Information

Item Value
gene id hddc2
gene name hddc2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14837944 ~ 14841301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922763.2
GCGCGTTCTGTGACGCATGCGCACTAGGAAACCGGCAGCTCTTAGATCTTATTTTATTGCAGAAACAGCATGGACGGCATGTTACACTTCATGAAACTTGTAGGCCAATTAAAgCGTGTTCCGAGGACTGGTTGGGTTTACCGGAATGTTAAGCAACCTGAAAGTGTGTCTGATCACATGTACAGGATGGCGATGATGGCGCTAACACTCCGAGACCCCAGTGTAAACAGAGAGAGATGCATGAAGCTGGCTTTAGTTCATGACCTGGCTGAGTGCATTGTGGGAGACATCGCTCCAGCCGACAACATCAGCAAAGCCGAGAAACACAGAAGAGAAAAGGAGGCGATGGTTCGCATCACAGGTCTGCTCACTGAAGATCTGCGTAAGGAGCTGTACCAGTTGTGGGAGGAGTATGAGAGTCAGTCGAGTCATGAGGCCAAGGTGGTGAAGGAGCTGGACCAGCTGGAGATGATCCTACAGGCTCATGAGTATGAGGAGCTGGAGGGGAACCCGGGCCGACTACAGGAGTTCTTCACCTCCACTGAAGGCCGTTTTCGTCACCCAGAAGTCCTAGCACTGGTGAAGAGCATAAACGAGGAAAGAGCATGTCACATGACGAAAGCAGGAGAGACAGGATCAGAGAAAACAGCAGAGCTGAACTGCCACACGACAACGACAGACTCCTCATGACCTGATGGTTACATATCAggatgtactgtacatttttatagttCAGATCATTCTCACCAACCAGGATCCACCTGGAAACAAAAAATACTGTTGTAATGTTAGCAAATCTTCAGAGAGCGTATTTTGTACACCTGCACTTCTCCATTATAATTAGTGTAATTATACTCCTAGACATTCACAGCAGTAATGAATAGTGTCTGGGTTACCATGAAAGTATAGTAAATCATGGCTGATCTCTTTTAACAA

Function

symbol description
hddc2 Predicted to enable 5'-deoxynucleotidase activity. Predicted to be active in cytoplasm. Orthologous to human HDDC2 (HD domain containing 2).

NR:

description
HD domain-containing protein 2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K07023 K07023; putative hydrolases of HD superfamily

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922763.2 True 936 mRNA 0.47 6 14837944 14841301

Neighbor

gene id symbol gene type direction distance location
esco2 esco2 coding upstream 130916 14697281 ~ 14707028 (+)
scara3 scara3 coding upstream 177998 14645633 ~ 14659946 (+)
reps1 reps1,LOC107727647 coding upstream 217046 14597191 ~ 14620898 (+)
papola papola coding upstream 414772 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 457370 14380493 ~ 14380574 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 473752 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 494883 15336184 ~ 15336256 (+)
LOC113532226 LOC108257938 coding downstream 643790 15485091 ~ 15487397 (+)
tbc1d32 tbc1d32,LOC107580719 coding downstream 665558 15506859 ~ 15557349 (+)
man1a1 man1a1,LOC106607779,LOC107727625,LOC106571376 coding downstream 810866 15652167 ~ 15762183 (+)
G295896 NA non-coding upstream 62012 14775723 ~ 14775932 (+)
G295852 NA non-coding upstream 117976 14718285 ~ 14719968 (+)
G295822 NA non-coding upstream 172177 14665532 ~ 14665767 (+)
G295818 NA non-coding upstream 173563 14664093 ~ 14664381 (+)
G295787 NA non-coding upstream 206784 14627102 ~ 14631160 (+)
G295917 NA non-coding downstream 1749 14843050 ~ 14870272 (+)
G296181 NA non-coding downstream 464260 15305561 ~ 15305765 (+)
G296151 hsf2 non-coding downstream 482548 15323849 ~ 15324587 (+)
G296240 NA non-coding downstream 553518 15394819 ~ 15395021 (+)
G296247 NA non-coding downstream 614981 15456282 ~ 15501827 (+)
trnas-gcu_16 NA other upstream 450387 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 452439 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 453557 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 455192 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 533253 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 282466 15123767 ~ 15189612 (+)
G296138 NA other downstream 382345 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1325097 16166398 ~ 16180232 (+)
G296562 NA other downstream 1472962 16314263 ~ 16315126 (+)
G296825 NA other downstream 1755849 16597150 ~ 16597787 (+)

Expression


Co-expression Network