papola (papola)


Basic Information

Item Value
gene id papola
gene name papola
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14403617 ~ 14423172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922943.2
TTTGATCTGactcacagccaatcacagcgcaggAGGAGGGTTACGTAACACAGACGAGGCGTGAGTTCGTGTTGTTGCCGGAGCGCCATGTTCGcgtaaacaaaagaaatcatttccacacacctgtacagctgTGCGCTTTCACACACCAACTGAGCACCACaggacacaaaaacaaaacaaaacaaaatgtttcgAATTAATGCAAGACGCTGAGTAAAAGACAAAGCTCTTCACAATGCCTtttccAATTACAAATCAGGCGCAACCAGCCCAGGACACCCCAAAGCATTATGGGATCACGTCGCCCATCAGCCTGGCTCAGCCGAAAGAGTCAGACCTGGTGCAGACGCAGAAACTGGTGGAGGCGCTGAAGCCTTTCGGTGTGTTTGAGGAGGAGCTGGAGCTGCAACGGAGAATCCTGGTTTTGGGAAAACTTAACACGCTTGTCAAGGAGTGGATCCAGGACATCAGCAGGTCCAAGAATATACCTCCATCATTGATAGAAAATATTGGCGGAAAAATATTTACGTTCGGCTCCTATAGGTTAGGAGTCCACACAAAAGGTGCTGATATAGATGCCCTCTGTGTCGCTCCTCGCCATGTGGATAGGTCCGACTTCTTCACCTCTTTTTACGAGAAGTTAAAAGAGCAAGAGGAGGTCAAAGATTTAAGGGCTGTCGAAGAGGCGTTCGTCCCTGTGATTAAACTGTGCTTTGATGGCATTGAGATTGATATCCTGTTTGCTCGGTTAGCGCTGCAGACCATTCCAGAGAACCTGGACCTGCGGGACGATAGTTTACTGAAGAATCTGGATATCCGCTGTATAAGGAGTCTGAACGGTTGCAGGGTGACGGATGAGATTCTCCACCTGGTGCCAAACATTGAGAATTTCAGACTCACTCTTAGGGCCATCAAACTGTGGGCTAAACGTCACAACATATATTCGAACATCTTGGGTTTCTTGGGCGGTGTGTCATGGGCGATGCTGGTGGCGAGAACATGTCAGCTCTACCCCAACGCTGTGGCTTCAACCCTCGTGTATAAGTTCTTCCTAGTGTTTTCTAAATGGGAGTGGCCTAATCCAGTCCTTTTGAAGCAGCCGGTAGAGTGCAACCTCAACCTGCCAGTGTGGGACCCAAGGGTGACGCCGAGTGACCGGTACCACCTTATGCCCATCATCACACCAGCTTATCCTCAGCAAAACTCCACCTACAACGTGTCCGCGTCCACCCGCAACGTCATGGTCGAAGAGTTCAAACAGGGTCTGGCCATTATGGATGAAATATTGCAGAACAAAGCAGACTGGTCCAAACTATTTGAAGCTCCAAACTTCTTTCAGAAATACAAGCATTATATTGTGTTGCTAGCAAGTGCGCCCACTGAGAAGCAGCACCTCGAGTGGGTCGGCCTTGTTGAGTCCAAGATCCGAATCCTGGTGGGAAGCCTGGAGAAAAATGAGTTCATCACTCTCGCACATGTGAATCCACAGTCGTTCCCAGGACCCAAGGAAAGCAATAAAACGCCAGAGTTTAGCACAATGTGGGTCATTGGTATTGAGTTCAGAAAAATGGAGGGGTCTGAACTTCTTAATGTCGACTTGACATACGACATCCAGTCATTCACAGACACGGTGTACCGTCAAGCCATCAGCAGCAAGATGTTTGAGTCTGACATGAAAATAACGGCGATGCATGTGAAGCGGAAGCAGCTTCACCAGCTCCTGCCGGATCTTGTTATCCCAAAAAGGAGAAAGCATTCGACTGAAGGCCTGCGTACCGTGAATGAGGGCAGTGTTGACTTGTTGCTGGACAGtgataacagcatgtccatGCCCTCACCCACCGGCACCTCCAGTGCTGCCAGGACACCCTTCTCTGCCAGTCCTCACCGCTCCACAGGGACCACTGCCAGCTCAGATTCTCAGGGGAAGACAGACACCTCAGGAAGCACGCATCCTACTGCAGCGTGTCTATCAGAGCCGAAGACCTCCGGTAGGAGCAGTCCTCCTTGTGCACAGAGGAGACCGGGCTCACCCCTCCATGATGAGAACCCCAAGAAGCTCAGATTGCAGGAGCATTCGACTGTGAATGAGGGCAGCATGGACCTGTCCGTGGACAGGGATAACAGCACGTCCATGCCCTTACCCACCGGCACCTCCAGGACCGCCTTCTCTGCCAGTCCTCACCgCTCCACAGGGACCACTGCCAGCTCAGATTCTCAAGGAAAGATGGACACGTCAGTAGACACGCATACTGCTGCAGCGTGTCCATCAGAGACAGAAACCCCCAGTCCTGCTTGTGCAGGGAAGAGACCGGGCTCACCGCTCCATGATGAGCAAGCCAAGAAGCTCAGATTAGAGGAGGATTCTACCTCAGAATCGGTGGACCAGGCTGCTGAATTTTCTCAGGCTAGCGATTTCACTGCTTTAGACAGAGAGGTGAAAATGGAGACACAGGCAGGGGAGTCGGATGCAGAAGGGAAGATACCACCATCTCGGaaaatgtcCAGTACTGATCTTTCTGATGTTCCTCATCCTCCAGCTAACCCCATCCAAGTGGTGAAAAACTCCATAAAGCTCAGACTGAGTAGGTAGAATCAGTTAGGCCTCTCCTTCAACCTGCCTTCACAATAGCAAGCAACAAACTGACAGTCGATTATATATTAGCCCTGAAAGTGCATGACACAGAGTCGCCGTTCCAGCGACAGGGTGTAAATCATTGTTTTAATTAAGATTTTCTTAATTGTATGCAGTTTAGTTATGATGGTATAATGTAACAAATTCAAATGATTCCTTGGATGGATCACACGGTGTGGACAGTACGAAGTCCCCCCTGCTCTCACAacttgatggaaaaaaaaaactgaaggtCTCGTACTTACCTCAGtattaaaatgcagaaatagCAAA
>XM_034313726.1
TCCGACTTCTTCACCTCTTTTTACGAGAAGTTAAAAGAGCAAGAGGAGGTCAAAGATTTAAGGCTGTCGAAGAGGCGTTCGTCCCTGTGATTAAACTGTGCTTTGATGGCATTGAGATTGATATCCTGTTTGCTCGGTTAGCGCTGCAGACCATTCCAGAGAACCTGGACCTGCGGGACGATAGTTTACTGAAGAATCTGGATATCCGCTGTATAAGGAGTCTGAACGGTTGCAGGGTGACGGATGAGATTCTCCACCTGGTGCCAAACATTGAGAATTTCAGACTCACTCTTAGGGCCATCAAACTGTGGGCTAAACGTCACAACATATATTCGAACATCTTGGGTTTCTTGGGCGGTGTGTCATGGGCGATGCTGGTGGCGAGAACATGTCAGCTCTACCCCAACGCTGTGGCTTCAACCCTCGTGTATAAGTTCTTCCTAGTGTTTTCTAAATGGGAGTGGCCTAATCCAGTCCTTTTGAAGCAGCCGGTAGAGTGCAACCTCAACCTGCCAGTGTGGGACCCAAGGGTGACGCCGAGTGACCGGTACCACCTTATGCCCATCATCACACCAGCTTATCCTCAGCAAAACTCCACCTACAACGTGTCCGCGTCCACCCGCAACGTCATGGTCGAAGAGTTCAAACAGGGTCTGGCCATTATGGATGAAATATTGCAGAACAAAGCAGACTGGTCCAAACTATTTGAAGCTCCAAACTTCTTTCAGAAATACAAGCATTATATTGTGTTGCTAGCAAGTGCGCCCACTGAGAAGCAGCACCTCGAGTGGGTCGGCCTTGTTGAGTCCAAGATCCGAATCCTGGTGGGAAGCCTGGAGAAAAATGAGTTCATCACTCTCGCACATGTGAATCCACAGTCGTTCCCAGGACCCAAGGAAAGCAATAAAACGCCAGAGTTTAGCACAATGTGGGTCATTGGTATTGAGTTCAGAAAAATGGAGGGGTCTGAACTTCTTAATGTCGACTTGACATACGACATCCAGTCATTCACAGACACGGTGTACCGTCAAGCCATCAGCAGCAAGATGTTTGAGTCTGACATGAAAATAACGGCGATGCATGTGAAGCGGAAGCAGCTTCACCAGCTCCTGCCGGATCTTGTTATCCCAAAAAGGAGAAAGCATTCGACTGAAGGCCTGCGTACCGTGAATGAGGGCAGTGTTGACTTGTTGCTGGACAGtgataacagcatgtccatGCCCTCACCCACCGGCACCTCCAGTGCTGCCAGGACACCCTTCTCTGCCAGTCCTCACCGCTCCACAGGGACCACTGCCAGCTCAGATTCTCAGGGGAAGACAGACACCTCAGGAAGCACGCATCCTACTGCAGCGTGTCTATCAGAGCCGAAGACCTCCGGTAGGAGCAGTCCTCCTTGTGCACAGAGGAGACCGGGCTCACCCCTCCATGATGAGAACCCCAAGAAGCTCAGATTGCAGGAGCATTCGACTGTGAATGAGGGCAGCATGGACCTGTCCGTGGACAGGGATAACAGCACGTCCATGCCCTTACCCACCGGCACCTCCAGGACCGCCTTCTCTGCCAGTCCTCACCgCTCCACAGGGACCACTGCCAGCTCAGATTCTCAAGGAAAGATGGACACGTCAGTAGACACGCATACTGCTGCAGCGTGTCCATCAGAGACAGAAACCCCCAGTCCTGCTTGTGCAGGGAAGAGACCGGGCTCACCGCTCCATGATGAGCAAGCCAAGAAGCTCAGATTAGAGGAGGATTCTACCTCAGAATCGGTGGACCAGGCTGCTGAATTTTCTCAGGCTAGCGATTTCACTGCTTTAGACAGAGAGGTGAAAATGGAGACACAGGCAGGGGAGTCGGATGCAGAAGGGAAGATACCACCATCTCGGaaaatgtcCAGTACTGATCTTTCTGATGTTCCTCATCCTCCAGCTAACCCCATCCAAGTGGTGAAAAACTCCATAAAGCTCAGACTGAGTAGGTAGAATCAGTTAGGCCTCTCCTTCAACCTGCCTTCACAATAGCAAGCAACAAACTGACAGTCGATTATATATTAGCCCTGAAAGTGCATGACACAGAGTCGCCGTTCCAGCGACAGGGTGTAAATCATTGTTTTAATTAAGATTTTCTTAATTGTATGCAGTTTAGTTATGATGGTATAATGTAACAAATTCAAATGATTCCTTGGATGGATCACACGGTGTGGACAGTACGAAGTCCCCCCTGCTCTCACAacttgatggaaaaaaaaaactgaaggtCTCGTACTTACCTCAGtattaaaatgcagaaatagCAAAGTGATGTGTATAAATTACACAGTAAACTGTTTATATCTTGGCAAGAAACAGTTGATATAATAACTGTAGTGGTTGCAACTCGCCCACTAGAGAAAGCTGAAGTGGCATGAGAgacttgtcacttgctagtgtgaacacagcATCAGAGAGGCCAGACCAAAGCCTGTGGCATGCTAGTGTGGAGACAGCATTGGAGAGGCTAGACCAGGGCCCCATAGCTGCACTGTGTCACGTACAGAGCACCCTTTCAACCACTCTCGAAGACTCCCAATGCAGTGTTTGACTTGATCCACCAGAGGGCGACTCTGCACTTCTGTAAACTCCCTGATGACTCTACCACCACTCCTTGTCTCCACGGAGAAAATaactgaatacattttttcatgtgCTCACAGCCTCGTTGTAACGACTagacatgtgtttgtgtgagctcGTGCGCATAAAACTTTATTCTCATCTTCCTGTATGTCGTCCGACACAGatgacatttctttaaaatgagtGTGCTTTTCCtttgtgcttttcattttaaagaatgtGGCATATTTTATAGAGTGACTGGGTACCAAGCCGCTGTATATGAAGATTATTAAGAGATCAGGATCAATTAAACTGCATTAAGTTCGACAGaactaataaacattttatatgtaaaaaaaaaaaaatagatatttgaaaaatatttgacCAAAATAATCTCTAAGATGAGATTGTACCAGTTTAAACATCTCTCATTTTGAAAGCATCAAGTGGTCACTATAACATCAGGTCTAacttgtagatttttttttctgtttgtggtCTTCTTTACCTTGTGTAAATCCATTACAATGAaaatgtgaggggaaaaaatgcatttttttttttttgctttgggCCTTTTCTTTTTATGTCAGGATTTTTATTACTAATCTGAAATCAGTGAtgcatatttaaatgcattttgatCTAGCATTATTAGTACATAAGCCCAAACATTTTCTGTCATAAGCTCTTGGCCGTGATGAGATGGAAATCAGAGCAGTAGCATATGAAGCTTGGAATTAATGATAGTTTTTGAAGCAGAAGGATTTAGTTGATTTATGAGATGTGCACAGGCTTTTTCTTATTCAATCTTTCGCTGATACGTTAAGAGATTTGTTTGTCTTAATTATCTTTGTAAATTGTGTGGAGACACAACAGGACAGCTGCTCCAGGAATGCTGTTTATTCCACTATGTGCAAAAGCAAAACTCTTTGGTTTCATCATATCCTCAGTTCTTACTTCTCTTCTCACAGACTTATTTGTAAAAACAAgctgttataattttttttcaccaataAAGTTCtacaaaattacaaagaaa

Function

symbol description
papola Predicted to enable polynucleotide adenylyltransferase activity. Predicted to be involved in mRNA polyadenylation. Predicted to act upstream of or within RNA 3'-end processing; RNA polyadenylation; and mRNA processing. Predicted to be active in nucleus. Orthologous to human PAPOLA (poly(A) polymerase alpha).

NR:

description
PREDICTED: poly(A) polymerase type 3-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922943.2 False 2911 mRNA 0.49 26 14403617 14421827
XM_034313726.1 True 3642 mRNA 0.45 22 14406570 14423172

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_9 NA coding upstream 23043 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 24758 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 25513 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 27209 14367708 ~ 14376408 (+)
galca LOC108258153 coding upstream 36338 14357280 ~ 14367279 (+)
reps1 reps1,LOC107727647 coding downstream 174019 14597191 ~ 14620898 (+)
scara3 scara3 coding downstream 222461 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 274109 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 414772 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 891881 15315053 ~ 15322483 (+)
trnas-gcu_22 NA non-coding upstream 2142 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 4238 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 5685 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 6391 14397145 ~ 14397226 (+)
G295597 NA non-coding upstream 143627 14259536 ~ 14259990 (+)
G295766 NA non-coding downstream 133557 14556729 ~ 14574795 (+)
G295787 NA non-coding downstream 203930 14627102 ~ 14631160 (+)
G295818 NA non-coding downstream 240921 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 242360 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 295113 14718285 ~ 14719968 (+)
trnas-gcu_16 NA other upstream 16060 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 18112 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 19230 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 20865 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 98926 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 700595 15123767 ~ 15189612 (+)
G296138 NA other downstream 800474 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1743226 16166398 ~ 16180232 (+)
G296562 NA other downstream 1891091 16314263 ~ 16315126 (+)
G296825 NA other downstream 2173978 16597150 ~ 16597787 (+)

Expression


Co-expression Network