reps1 (reps1,LOC107727647)


Basic Information

Item Value
gene id reps1
gene name reps1,LOC107727647
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14597191 ~ 14620898 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923152.2
atcCGGGTCTTTCCGCTATCGCGTAGACACGCGCTAGAGACTGGGCGATGACGTCACGGGTGCAGGAATGGCGGCGCCGTCTGTCTGTGTGAGGGAGGGAGCCTGAAGAGCCTGAAAACTTTACTCCACAGCACACATTCTGCGGATTTAACACACCGCATCGTTTCAGTCGCCGAGGACACGAGGACTGAGTTAAAAGGCACAGAGAGCTATCCCGTGGCTTAGAGTCAAATACGGCTGCGGATATAAGCTCgctaagctagctaacttaTTACTTGTAACTTCTTTACCTGCGTTAGCTAGGAAGCTAACGTTAGAGCTGTAGCTGCACTAGTGAAAGGtctgactttatttttttttgtcatttctaacaccacacactgagAGGGAAAAGGGGTAGCTAAGGGACGCACTTGAGCCTTGGCTAGCCGGTTTATTTCCGCTGGTTGACACTAGCAGTCCGGGGTATATTGCTGCCTAGCCAGCTAAGCGTTAGCATTGTCGCTAATAACTTAGCCTATATGCCACAATGGAGAGTTTAACGCTGAGCGACGTCGAGCAGAAATACTACTcggatttgtttgtttactgcgACGTGGACAACACGAAGAAAGTGGCCTCCAACGGCAAGGTGTTGGAGCTGTTCCGGGCGGCCCAGCTCTCCAACGACGTGGTGCTGCAGATTACCGAACTGTGTGGTGCGACTCGGCTTGGACACTTTGGTAGGAGCCAGTTCTACATCGCGTTGAAACTTATTGCAATAGCCCAGTCTGGACTGCCGCTTCGCGTCGAGAGCCTGAACAGTGTCAAAGACTTGCCCCTCCCTCGCTTTGTGGTCGGTAAGAATGAACAGGAGGCCAGACATGCGTCCGTGTACCCGGACACAGAGAACCAGGGGCCGTACTCCAGTGTGATCCCCAGACCCCCGGGCCGAGTCGCAACCAAAAAAGTGTCCACGCATGAAGTGATCCAGCCCTGTGCGCCCCCTGTTGAGCCCCAGCCCGACAACACGTCTCCTGTAGTGTCCCCTCACCAGTCTCCGCCCACCTCACCTCCCGCATGGAGGAAGCACAAGCGCCAACCCAGCGGCGGCACCGTGGACCGACAGGCTGCGGTGGCAGGAGCCGTGTGGCCACCTTTCAGAGAAGCACAATCGGGTCCTGTGGCAGGTGATGGGATGTGGTCTGCCcactctcctcctcctgttcaGGAAAACTGGGTCAGTTTTACAGACACTCCTCCCTCCAGCACACTTCCAGCAATGCATCCCTCTTCTGCTCAGGAGAGCACAACAGTACGAACAGTGGCATCTGCTGCTACTACAAACGAGATCCAAAGACAGGCCAGTGGTTACGACGACCCCTGGAAAATCACAGATGAGCAAAGACAGTATTACATTAATCAGTTCAAAACTATCCAACCTGATCTGACAGGTTTTATCCCAGGCTCTGCCGCAAAGGAGTTTTTTACTAAGTCGAAGCTGCCTATTTTAGAATTGTCTCACATTTGGGAGTTATCAGATTTTGATAAAGACGGTGCACTGACCCTGGACGAGTTCTGTGCAGCGTTTCATCTCGTGGTTGCCAGAAAGAACGGTTATGACCTTCCTGAGAAGCTTCCAGAGAGCTTGATGCCAAAGCTTATTGACCTGGATGATTCAGCAGgagtccCAGAGCCTGCACCTGAGGTGGGCTTCTCTGGTTCCCCTGTGGAGGTGACGCCTAATAAATCTCCCTCCATGCCTTCCTTAAACCAGAACTGGCCCGAGCTCAACCAGAGCAACGAGCAGTGGGAGACTTTTAGCGAACGCTCCTCAAGCTCACAAACTCTGACCCAATTTGATTCTAACATTGCACCAGCTGACCCTGATACGGCCATCGTGCATCCTGTACCCATCCGTATGACGCCTAGCAAGATACACATGCAGGAGATGGAGCTGAAGAGAACTGGAAGTGACCACACACATCCAACAAGTCCATTAATCGCTAAACCTCCCGAACTCTCAgaggagaaaaagctagcagcAATTAAATTCCCTGGCAGCACTGTAGGTGACGGCTATAGCAGCTCTGATTCATTTACATCTGATCAAGAACCCATTTCAAGTGCTGCAACCAGACAGagGTCTCACTCTGGGACATCTCCTGAAGGTCTGAAAGCTGTGGCTCCACCCCCTCCTCCTCCCCGCCCTCATGCTTCACACTCACGCTCTTCCTCTCTAGACATGAACAGGAACTTTGCCACTGTCACTGCAGGGGCTCAGCAGCAGGCAGGAGTGGTGGCTTTTCCTCCTGCTGTGCCTCCTCGACCACTGGCTACACAGACGTCAGTGCCACATGGGCACCGTTCCGTAGATGGAGATGGTCTTCCAGCACATTCCAGCACTTCACCCCAGCAGATACCTGAACAGCCCAATTTTGCAGATTTCAGCCAGTTCCAGGCGTTTGCTGTGGAGCAGCCTGCAGATGAAGGGGACAAACAGCAGGACAGTGGACAGGTAGAGAAATGTGCAGACACTGCTGCAGCTTTGAGATCAGTGAAGAATGAAACTCAGCCGGAGGAACGACCTGCGGCCACTGTGAACTCTGCCAAAGGATCCACTCCACTGGCCCCTCCTCCCAAACCTGTTCGGCGAAGGCTGAAGTCAGAAGATGAGCTCAGACCTGAAGTGGACGAGCACcctcagaagtccaacatcgtTGCCACTGTCCTCGCTACACAGCCTTCTATACCACGGTCTGTTGGGAAGGATAAAAAGGCAATCCAAGCTTCCATTAGAAGAAACAAAGAGACGAATACGGTTCTGGCTAGACTCAACAGtgaattacagcagcagttaaaggaCTTGCTAGAGGAGAGAATATCATTGGAAGTTCAACTGGAGCAGCTGAGACCTTTTTCCCATTTGTAAGTGTGTGAAGGAAGAGCCGTGAAGAGCGACGGGAAAGGTCTGACAGATCCTCCGGGAGGACGCTCATGTCAGCCCTCTTCCTGCTCCTCATCTGGCTGCGTGAGGAAAGACTGCTGCTTCCTCCATAACGCTCTCACACATCCCATCCTGCTCTGATAGAGAGGCTGTCCTCACAGCCAGGGGTAGGAATATATAACATTTTGGCACTTTGACAAAACAGAGTGtgagttaaatataaatgtcagTCCTCTGCTTCTGCAGCACACGGTTAGCACTGCTATTATGGGGAGTATATGTTCTTGAATCACACTGAGGATGATGGGAAGGTGATGATTCTCCAGCAGTTCTGGCCTGATAATCATGTGAGTGCAGGGGAGGACTGATTTATTTTTGGGGAGAGATGATGCTCTGTTTCAGAAGTACGTTCACGAATGACTGCTAGACACTCGTTCATGTTTCTTGTAAGCTCCCTAACATGCCATTGGCCAACACCAATATACGTGTttgtgtgcgcacgtgtgtatgtgtgtgagtgatggttATAAATATATGGCATAATACAGAGTTTCTCAGCTCCGGTCCTGAAGGTCACTGCTCTGCACATGCATCACACCTGATAAgcgcatgatgatgatgatgatgatgaagaagatgaagttTGATGATGCGTGTTAGCACAGGGTAAAGTGTCACCGGGAGTAGAGTTGAGAAGCACTGGCATAATGCATCAAAGACCgctctgttttcttcttttaacatctgtggtataaaaatgtttttctaccTTGTACAGTCATTGACCCTGTATAACAGATCTTTTCTTTCATGACTCCTGCACTCATAAGAGCAGTTCCTGTATGGCACAGAACCTGAGCGAGTCATGCTTCAAAATCATGTTTTCCTGTtccatcagtttaaaaaaatgagacctGAAACTGCACTTTCTTCCCCTTTGCTTTCCTTTGTTTGTCCGTATTTTACCCTGTAACACTTTTTGCATGTCGTTCCTGTTCTTATTTGATCTAAAACAGCTCTTAAAATCGAACCACTTGATTTGTACGTGTATAATCTTAACCAGTACTAGAGTTTTACATTCTTACTCAAACTTAATGTCTTAAGTGTTCGGTTAGTtagtttgtttatctgttttttccCTTCGGTGTCCCCGAAGCCTTACTCCTTTCATTCAGGTTTTTACACTAATCTTCCCCCCGTGTTGAATCAAggtgagccttttttttttttcctgctgttcAGGTCGATGTACTGTATAAGGGGTTTGTTGTATATTGTATGATACACACCTTTTGATCTCATATGTAAATTTGCATTAATTGCTGACTAATAGCAAATATTCTATTTAATTGCTTATATTATGGCTGTGGGATCATAGATGTTTAACTGCATGGATGTATCTCTGCAGAATGAACTAGCAGctgtgtgatttttacacaaaataaaaatggcacaatattttaataa
>XM_026923153.2
atcCGGGTCTTTCCGCTATCGCGTAGACACGCGCTAGAGACTGGGCGATGACGTCACGGGTGCAGGAATGGCGGCGCCGTCTGTCTGTGTGAGGGAGGGAGCCTGAAGAGCCTGAAAACTTTACTCCACAGCACACATTCTGCGGATTTAACACACCGCATCGTTTCAGTCGCCGAGGACACGAGGACTGAGTTAAAAGGCACAGAGAGCTATCCCGTGGCTTAGAGTCAAATACGGCTGCGGATATAAGCTCgctaagctagctaacttaTTACTTGTAACTTCTTTACCTGCGTTAGCTAGGAAGCTAACGTTAGAGCTGTAGCTGCACTAGTGAAAGGtctgactttatttttttttgtcatttctaacaccacacactgagAGGGAAAAGGGGTAGCTAAGGGACGCACTTGAGCCTTGGCTAGCCGGTTTATTTCCGCTGGTTGACACTAGCAGTCCGGGGTATATTGCTGCCTAGCCAGCTAAGCGTTAGCATTGTCGCTAATAACTTAGCCTATATGCCACAATGGAGAGTTTAACGCTGAGCGACGTCGAGCAGAAATACTACTcggatttgtttgtttactgcgACGTGGACAACACGAAGAAAGTGGCCTCCAACGGCAAGGTGTTGGAGCTGTTCCGGGCGGCCCAGCTCTCCAACGACGTGGTGCTGCAGATTACCGAACTGTGTGGTGCGACTCGGCTTGGACACTTTGGTAGGAGCCAGTTCTACATCGCGTTGAAACTTATTGCAATAGCCCAGTCTGGACTGCCGCTTCGCGTCGAGAGCCTGAACAGTGTCAAAGACTTGCCCCTCCCTCGCTTTGTGGTCGGTAAGAATGAACAGGAGGCCAGACATGCGTCCGTGTACCCGGACACAGAGAACCAGGGGCCGTACTCCAGTGTGATCCCCAGACCCCCGGGCCGAGTCGCAACCAAAAAAGTGTCCACGCATGAAGTGATCCAGCCCTGTGCGCCCCCTGTTGAGCCCCAGCCCGACAACACGTCTCCTGTAGTGTCCCCTCACCAGTCTCCGCCCACCTCACCTCCCGCATGGAGGAAGCACAAGCGCCAACCCAGCGGCGGCACCGTGGACCGACAGGCTGCGGTGGCAGGAGCCGTGTGGCCACCTTTCAGAGAAGCACAATCGGGTCCTGTGGCAGGTGATGGGATGTGGTCTGCCcactctcctcctcctgttcaGGAAAACTGGGTCAGTTTTACAGACACTCCTCCCTCCAGCACACTTCCAGCAATGCATCCCTCTTCTGCTCAGGAGAGCACAACAGTACGAACAGTGGCATCTGCTGCTACTACAAACGAGATCCAAAGACAGGCCAGTGGTTACGACGACCCCTGGAAAATCACAGATGAGCAAAGACAGTATTACATTAATCAGTTCAAAACTATCCAACCTGATCTGACAGGTTTTATCCCAGGCTCTGCCGCAAAGGAGTTTTTTACTAAGTCGAAGCTGCCTATTTTAGAATTGTCTCACATTTGGGAGTTATCAGATTTTGATAAAGACGGTGCACTGACCCTGGACGAGTTCTGTGCAGCGTTTCATCTCGTGGTTGCCAGAAAGAACGGTTATGACCTTCCTGAGAAGCTTCCAGAGAGCTTGATGCCAAAGCTTATTGACCTGGATGATTCAGCAGgagtccCAGAGCCTGCACCTGAGGTGGGCTTCTCTGGTTCCCCTGTGGAGGTGACGCCTAATAAATCTCCCTCCATGCCTTCCTTAAACCAGAACTGGCCCGAGCTCAACCAGAGCAACGAGGATACGGCCATCGTGCATCCTGTACCCATCCGTATGACGCCTAGCAAGATACACATGCAGGAGATGGAGCTGAAGAGAACTGGAAGTGACCACACACATCCAACAAGTCCATTAATCGCTAAACCTCCCGAACTCTCAgaggagaaaaagctagcagcAATTAAATTCCCTGGCAGCACTGTAGGTGACGGCTATAGCAGCTCTGATTCATTTACATCTGATCAAGAACCCATTTCAAGTGCTGCAACCAGACAGagGTCTCACTCTGGGACATCTCCTGAAGGTCTGAAAGCTGTGGCTCCACCCCCTCCTCCTCCCCGCCCTCATGCTTCACACTCACGCTCTTCCTCTCTAGACATGAACAGGAACTTTGCCACTGTCACTGCAGGGGCTCAGCAGCAGGCAGGAGTGGTGGCTTTTCCTCCTGCTGTGCCTCCTCGACCACTGGCTACACAGACGTCAGTGCCACATGGGCACCGTTCCGTAGATGGAGATGGTCTTCCAGCACATTCCAGCACTTCACCCCAGCAGATACCTGAACAGCCCAATTTTGCAGATTTCAGCCAGTTCCAGGCGTTTGCTGTGGAGCAGCCTGCAGATGAAGGGGACAAACAGCAGGACAGTGGACAGGTAGAGAAATGTGCAGACACTGCTGCAGCTTTGAGATCAGTGAAGAATGAAACTCAGCCGGAGGAACGACCTGCGGCCACTGTGAACTCTGCCAAAGGATCCACTCCACTGGCCCCTCCTCCCAAACCTGTTCGGCGAAGGCTGAAGTCAGAAGATGAGCTCAGACCTGAAGTGGACGAGCACcctcagaagtccaacatcgtTGCCACTGTCCTCGCTACACAGCCTTCTATACCACGGTCTGTTGGGAAGGATAAAAAGGCAATCCAAGCTTCCATTAGAAGAAACAAAGAGACGAATACGGTTCTGGCTAGACTCAACAGtgaattacagcagcagttaaaggaCTTGCTAGAGGAGAGAATATCATTGGAAGTTCAACTGGAGCAGCTGAGACCTTTTTCCCATTTGTAAGTGTGTGAAGGAAGAGCCGTGAAGAGCGACGGGAAAGGTCTGACAGATCCTCCGGGAGGACGCTCATGTCAGCCCTCTTCCTGCTCCTCATCTGGCTGCGTGAGGAAAGACTGCTGCTTCCTCCATAACGCTCTCACACATCCCATCCTGCTCTGATAGAGAGGCTGTCCTCACAGCCAGGGGTAGGAATATATAACATTTTGGCACTTTGACAAAACAGAGTGtgagttaaatataaatgtcagTCCTCTGCTTCTGCAGCACACGGTTAGCACTGCTATTATGGGGAGTATATGTTCTTGAATCACACTGAGGATGATGGGAAGGTGATGATTCTCCAGCAGTTCTGGCCTGATAATCATGTGAGTGCAGGGGAGGACTGATTTATTTTTGGGGAGAGATGATGCTCTGTTTCAGAAGTACGTTCACGAATGACTGCTAGACACTCGTTCATGTTTCTTGTAAGCTCCCTAACATGCCATTGGCCAACACCAATATACGTGTttgtgtgcgcacgtgtgtatgtgtgtgagtgatggttATAAATATATGGCATAATACAGAGTTTCTCAGCTCCGGTCCTGAAGGTCACTGCTCTGCACATGCATCACACCTGATAAgcgcatgatgatgatgatgatgatgaagaagatgaagttTGATGATGCGTGTTAGCACAGGGTAAAGTGTCACCGGGAGTAGAGTTGAGAAGCACTGGCATAATGCATCAAAGACCgctctgttttcttcttttaacatctgtggtataaaaatgtttttctaccTTGTACAGTCATTGACCCTGTATAACAGATCTTTTCTTTCATGACTCCTGCACTCATAAGAGCAGTTCCTGTATGGCACAGAACCTGAGCGAGTCATGCTTCAAAATCATGTTTTCCTGTtccatcagtttaaaaaaatgagacctGAAACTGCACTTTCTTCCCCTTTGCTTTCCTTTGTTTGTCCGTATTTTACCCTGTAACACTTTTTGCATGTCGTTCCTGTTCTTATTTGATCTAAAACAGCTCTTAAAATCGAACCACTTGATTTGTACGTGTATAATCTTAACCAGTACTAGAGTTTTACATTCTTACTCAAACTTAATGTCTTAAGTGTTCGGTTAGTtagtttgtttatctgttttttccCTTCGGTGTCCCCGAAGCCTTACTCCTTTCATTCAGGTTTTTACACTAATCTTCCCCCCGTGTTGAATCAAggtgagccttttttttttttcctgctgttcAGGTCGATGTACTGTATAAGGGGTTTGTTGTATATTGTATGATACACACCTTTTGATCTCATATGTAAATTTGCATTAATTGCTGACTAATAGCAAATATTCTATTTAATTGCTTATATTATGGCTGTGGGATCATAGATGTTTAACTGCATGGATGTATCTCTGCAGAATGAACTAGCAGctgtgtgatttttacacaaaataaaaatggcacaatattttaataa

Function

symbol description
reps1 Predicted to enable calcium ion binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to act upstream of or within receptor-mediated endocytosis. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human REPS1 (RALBP1 associated Eps domain containing 1).

NR:

description
PREDICTED: ralBP1-associated Eps domain-containing protein 1 isoform X1

GO:

id name namespace
GO:0006898 receptor-mediated endocytosis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20068 REPS; RalBP1-associated Eps domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923152.2 True 4393 mRNA 0.49 20 14597191 14620898
XM_026923153.2 False 4312 mRNA 0.49 19 14597191 14620898

Neighbor

gene id symbol gene type direction distance location
papola papola coding upstream 174019 14403617 ~ 14423172 (+)
trnas-gcu_9 NA coding upstream 216617 14380493 ~ 14380574 (+)
trnas-gcu_8 NA coding upstream 218332 14378778 ~ 14378859 (+)
trnas-gcu_7 NA coding upstream 219087 14378023 ~ 14378104 (+)
ak7a LOC108257562 coding upstream 220783 14367708 ~ 14376408 (+)
scara3 scara3 coding downstream 24735 14645633 ~ 14659946 (+)
esco2 esco2 coding downstream 76383 14697281 ~ 14707028 (+)
hddc2 hddc2 coding downstream 217046 14837944 ~ 14841301 (+)
serinc1 serinc1,LOC107598085,LOC107675084,LOC107675227 coding downstream 694155 15315053 ~ 15322483 (+)
trnaa-cgc_8 NA coding downstream 715286 15336184 ~ 15336256 (+)
G295766 NA non-coding upstream 22396 14556729 ~ 14574795 (+)
trnas-gcu_22 NA non-coding upstream 195716 14401394 ~ 14401475 (+)
trnas-gcu_21 NA non-coding upstream 197812 14399298 ~ 14399379 (+)
trnas-gcu_20 NA non-coding upstream 199259 14397851 ~ 14397932 (+)
trnas-gcu_19 NA non-coding upstream 199965 14397145 ~ 14397226 (+)
G295787 NA non-coding downstream 6204 14627102 ~ 14631160 (+)
G295818 NA non-coding downstream 43195 14664093 ~ 14664381 (+)
G295822 NA non-coding downstream 44634 14665532 ~ 14665767 (+)
G295852 NA non-coding downstream 97387 14718285 ~ 14719968 (+)
G295896 NA non-coding downstream 154825 14775723 ~ 14775932 (+)
trnas-gcu_16 NA other upstream 209634 14387476 ~ 14387557 (+)
trnas-gcu_14 NA other upstream 211686 14385424 ~ 14385505 (+)
trnas-gcu_13 NA other upstream 212804 14384306 ~ 14384387 (+)
trnas-gcu_11 NA other upstream 214439 14382538 ~ 14382752 (+)
arid1b arid1b,LOC108444017 other upstream 292500 14240519 ~ 14304691 (+)
trdn trdn,fbrsl1 other downstream 502869 15123767 ~ 15189612 (+)
G296138 NA other downstream 602748 15223646 ~ 15305400 (+)
G296430 LOC108257881,LOC107603058 other downstream 1545500 16166398 ~ 16180232 (+)
G296562 NA other downstream 1693365 16314263 ~ 16315126 (+)
G296825 NA other downstream 1976252 16597150 ~ 16597787 (+)

Expression


Co-expression Network