galca (LOC108258153)


Basic Information

Item Value
gene id galca
gene name LOC108258153
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14357280 ~ 14367279 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923305.2
AAAACAgggaaacagtaactctgtgCTGTAAACAGCctctgtactgtactgtactgtcaGCAACCACTGCAGTCCCGCGCTATATGGGAAGACGTCGGAATGAACTCACATGTCGGCTTGTTTCTTTTGTCATGTATTCACTTATGTGTGACAGAAATGTACATTATGGATGACAGGATCGGGCTGGGGAGACGGTTTGATGGTATAGGAGGGTTAAGTGGAGGAGGGGCTACTTCGAGACTACTGATCAACTATAAAGAACCTTATCGGAGTCAAATACTGGATTATTTGTTTAAGcCTAACTTTGGAGCGTCACTACACATTCTTAAAGTGGAAATAGGAGGCGATTCCCAAACCACAGACGGTACTGAGCcttcacacatgcacaatggGACTGATGTGAATTACTTCCGTGGCTATGAATGGTGGCTTATGAAGGAAGCCAAGAAGAGGAGCCCAAACATAACACTCATTGGTCTGCCCTGGGCTTTTCCAGGATGGGTTGGTAATGGGAGCAACTGGCCTTACAACTTTCCAGACATTACAGCTAACTATGTTGTGTCTTGGGTGACTGGAGCCAAACAATATCATGGTCTTGACATTGATTACATAGGGatATGGAATGAACGGGACTTTGATTCAAAGTACATCCAGGTGCTTCGAGACACATTAGACCGAGCTGATTTACCAAATGTAGGCATTATCGCAGCAGATGGGGATTGGGCCATTTCCAATGCCATGCTTGTTGATCCATATCTCAATGATGCTGTTGAAGTTATTGGTGTTCACTACCCTGGTACCATGACTGTCAAGGAGGCGCTGTTAACGGGTAAAAAGCTTTGGTCTTCTGAAGATTACAGCACGTTTAATAATGACATCGGGGCAGGATGCTGGGCTCGAATTCTTAACTGGAACTATGTCAATGGCAGGATGACATCGACAATCTCCTGGAATCTCATAGCAAGTTATTATGAAGATCTGTCTTTTGGTCGAGACGGTTTGATGACTGCAGAAGAGCCATGGAGTGGGAATTATGTTGTGGAATCCCCAATATGGATAACCGcTCACACTACTCAGTTTGCACAACCTGGCTGGACATATCTCCAGACTGTAGGGAACCTCACACATGGTGGAAGTTACGTAGCATTAACAGACGGCCAAGGGAACCTCACCATCGTAATAGAAACCATGactcACAATCACTCGCAGTGCATTCGGCCTTCACTCCCTCCTTTCAATGTTTCCGCTCAGGAAGCAACATTTCAGCTCAAAGGCTCCTTTGCTGCAATCACTCAGCTCCAGCTATGGTACTCAAAACTGGATTTCAGTACCAAAAAAGACATACTCTTCAAGAAAGCTGATCCCATAAAGGTTTCCAATGGACGTTTTACCTTGAAAGTGGATGTTGATGAACTTTTCACCATCACAACTGTCACCACTGGACAAAAAGGCTTCTACCCTGATCCTCCAGATTCTGCTGTATTTCCCAAGAGATACTTTGATGACTTCAGTGTCCAAAACCCTCCCTTCTCAGAGGCCCCGTATTTTGCTGATCAGACAGGTGTGTTTGAGTACTTCACAAACCTCACGGATCCAGGGCCACACAACTTCACTTTACGCCAGGTGGTCACCCAGCGGCCAGTTTCGTGGGGTTACGATGCGGATCAGACCATCAGTGTCATCGGTGACCACGCCTGGCAAGACATATCAGTCTCCTGTGACATTTACCTTGAAACTGAGGATGGCGGAGTCTTCGTTGCAGCCAGGGTGGATCAAAGCGGGGAATCAGTCCGAAGGGCCATGGGTGTATTTTACTGGGTTTTTGCAAATGGCACGTACAAAGTGACCAATGATATAGGTGGAGAAAAAGTTCTTGCTGAAGGATTGTCAGGGACAAGACCAGGAATAtggcacacactcactctcacagtAAAGGGTAATTTTGCCTTCGGAATGCTGAACGGTTTTCCTTTATGGAAGAATGCTGTTGTTCTTCAACCCAAGAATGGCTGGGCTGCAATTGGAACATCCTCATTTGAATTTGCACAGTTTGATAACTTTCTGGTGGATGCAGACTGATTACTTTTTTCTAACTGCTTTCAGTTCAAATACATATTCACCATGCACtcatgctgccttcaagtcctgTTGGAAATATCGTAAATATGAGGTGAATACACATGAACACCATCACAATGTCACAATTACAACTCAGGAAATTGTTTATTTCCCAGTTGTCAATAACAAAGTCATTGCGGCCCCAAGTATGAAAGTGACATTTATAACAGACAGTAAGATTTAGGTGGTAATTTTGCATGTTCACTGTTgagttcttcattttctttcagcaAGGCAAAATGAACTTCTTGTcattgacaaataaataaataaataaataaataaaaacaaaagacgTTTCTTCACGCCGTCCATTTTTTACGACCAAAACcatttgaacacacaacaccTCATGATCACCACCTCTGAACTTGTTTGCACAAAATTCCAAGCAGAACTTGAAGGTAGCAACACTTGAAAATGGGAGTACTATTTCTGTAGTATCTGTGAGTTTAAAGGGAAAAGGTGTCCATAAAtgccaatttatttttttttaatgatttgctGAGTGTGCATGCATATGTGCGTGTTTTGAACGATTTTTGaagtatatatttttgcaaatatgAATGAGCTGTGAATTTTCAAGCCtttaatgtatgtataaatgaCTTGCAAAtgcaa

Function

NR:

description
PREDICTED: galactocerebrosidase

GO:

id name namespace
GO:0006683 galactosylceramide catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0004336 galactosylceramidase activity molecular_function

KEGG:

id description
K01202 GALC; galactosylceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923305.2 True 2742 mRNA 0.43 17 14357280 14367279

Neighbor

gene id symbol gene type direction distance location
zdhhc14 zdhhc14,LOC108258056,LOC108444016,LOC107747944,LOC107679689,LOC107560202,LOC107742328 coding upstream 14568 14311216 ~ 14342712 (+)
LOC113531833 cldn20,LOC107560197,LOC107679668,LOC107555306,LOC107678665,LOC107742202 coding upstream 126563 14221122 ~ 14230717 (+)
LOC113532133 LOC108257866 coding upstream 137851 14195317 ~ 14219429 (+)
LOC113531931 LOC108257645 coding upstream 195557 14109393 ~ 14161723 (+)
LOC113531932 LOC108258045 coding upstream 250058 14105151 ~ 14107222 (+)
ak7a LOC108257562 coding downstream 429 14367708 ~ 14376408 (+)
trnas-gcu_7 NA coding downstream 10744 14378023 ~ 14378104 (+)
trnas-gcu_8 NA coding downstream 11499 14378778 ~ 14378859 (+)
trnas-gcu_9 NA coding downstream 13214 14380493 ~ 14380574 (+)
papola papola coding downstream 36338 14403617 ~ 14423172 (+)
G295597 NA non-coding upstream 97290 14259536 ~ 14259990 (+)
G295590 NA non-coding upstream 119571 14237487 ~ 14237709 (+)
G295333 NA non-coding upstream 340654 14016393 ~ 14016626 (+)
G295315 NA non-coding upstream 462483 13894449 ~ 13894797 (+)
G295269 NA non-coding upstream 629422 13727579 ~ 13727858 (+)
trnas-gcu_19 NA non-coding downstream 29866 14397145 ~ 14397226 (+)
trnas-gcu_20 NA non-coding downstream 30572 14397851 ~ 14397932 (+)
trnas-gcu_21 NA non-coding downstream 32019 14399298 ~ 14399379 (+)
trnas-gcu_22 NA non-coding downstream 34115 14401394 ~ 14401475 (+)
G295766 NA non-coding downstream 189450 14556729 ~ 14574795 (+)
arid1b arid1b,LOC108444017 other upstream 52589 14240519 ~ 14304691 (+)
LOC113532127 cebpzos other upstream 336530 14017524 ~ 14020750 (+)
trnaf-gaa_29 NA other upstream 802333 13554875 ~ 13554947 (+)
col12a1b LOC108257731,LOC108426313,LOC107745912 other upstream 806052 13468727 ~ 13551228 (+)
LOC113532225 NA other upstream 1083037 13272082 ~ 13274243 (+)
trnas-gcu_11 NA other downstream 15259 14382538 ~ 14382752 (+)
trnas-gcu_13 NA other downstream 17027 14384306 ~ 14384387 (+)
trnas-gcu_14 NA other downstream 18145 14385424 ~ 14385505 (+)
trnas-gcu_16 NA other downstream 20197 14387476 ~ 14387557 (+)
trdn trdn,fbrsl1 other downstream 756488 15123767 ~ 15189612 (+)

Expression


Co-expression Network