Item | Value |
---|---|
gene id | LOC113532330 |
gene name | mdga2,LOC108257548,LOC108411484,LOC107704381 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047613.1 |
NCBI id | CM018559.1 |
chromosome length | 22090854 |
location | 11814889 ~ 11996468 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
mdga2 | Predicted to be involved in regulation of presynapse assembly; regulation of synaptic membrane adhesion; and spinal cord motor neuron differentiation. Predicted to act upstream of or within neuron migration and pattern specification process. Predicted to be located in GABA-ergic synapse. Predicted to be active in glutamatergic synapse. |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026923673.2 | True | 6819 | mRNA | 0.45 | 17 | 11814889 | 11996468 |
XM_026923674.2 | False | 6816 | mRNA | 0.45 | 17 | 11814889 | 11996468 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
dio3b | LOC108257532 | coding | upstream | 176660 | 11636186 ~ 11638229 (+) |
myh6 | myh6,LOC103031694,LOC102786665,LOC780532,LOC108251423,LOC103381356 | coding | upstream | 227555 | 11581098 ~ 11587334 (+) |
bub1ba | LOC108257959 | coding | upstream | 254152 | 11548253 ~ 11560737 (+) |
apobb.1 | LOC108257904 | coding | upstream | 303695 | 11494790 ~ 11511194 (+) |
pdia6 | pdia6,LOC108411347,LOC107732640,LOC107693218,LOC107549125 | coding | upstream | 346131 | 11460575 ~ 11468758 (+) |
LOC113532427 | NA | coding | downstream | 62493 | 12058961 ~ 12070801 (+) |
LOC117599676 | NA | coding | downstream | 252396 | 12248864 ~ 12254559 (+) |
LOC113532202 | NA | coding | downstream | 262344 | 12258812 ~ 12262339 (+) |
rhag | rhag,LOC107695981,LOC107549521,LOC107685767,LOC107751290,LOC107712421 | coding | downstream | 291535 | 12288003 ~ 12302761 (+) |
si:ch211-22i13.2 | NA | coding | downstream | 307968 | 12304436 ~ 12310213 (+) |
G293884 | NA | non-coding | upstream | 88893 | 11725428 ~ 11725996 (+) |
G293873 | NA | non-coding | upstream | 122558 | 11690652 ~ 11692331 (+) |
G293864 | LOC108257814 | non-coding | upstream | 139228 | 11672483 ~ 11675661 (+) |
G293820 | NA | non-coding | upstream | 274936 | 11539526 ~ 11539953 (+) |
G293817 | NA | non-coding | upstream | 331299 | 11483382 ~ 11483590 (+) |
G294200 | LOC108257550,LOC107712407,LOC107549500,LOC107695971 | non-coding | downstream | 90980 | 12087448 ~ 12089190 (+) |
G294202 | LOC108257550 | non-coding | downstream | 99252 | 12095720 ~ 12096114 (+) |
G294227 | NA | non-coding | downstream | 137292 | 12133760 ~ 12134104 (+) |
G294373 | NA | non-coding | downstream | 249552 | 12246020 ~ 12246291 (+) |
G294393 | NA | non-coding | downstream | 315219 | 12311687 ~ 12311981 (+) |
rps29 | NA | other | upstream | 89557 | 11723981 ~ 11725332 (+) |
pak6b | pak6,LOC108257961,LOC108411385 | other | upstream | 235640 | 11561422 ~ 11579249 (+) |
G293528 | NA | other | upstream | 789916 | 11018406 ~ 11024973 (+) |
LOC117599733 | NA | other | upstream | 1132225 | 10681310 ~ 10682664 (+) |
LOC117599798 | NA | other | upstream | 1644150 | 10158955 ~ 10170739 (+) |
LOC113532225 | NA | other | downstream | 1275614 | 13272082 ~ 13274243 (+) |
col12a1b | LOC108257731,LOC108426313,LOC107745912 | other | downstream | 1472259 | 13468727 ~ 13551228 (+) |
trnaf-gaa_29 | NA | other | downstream | 1558407 | 13554875 ~ 13554947 (+) |
LOC113532127 | cebpzos | other | downstream | 2021056 | 14017524 ~ 14020750 (+) |
arid1b | arid1b,LOC108444017 | other | downstream | 2244051 | 14240519 ~ 14304691 (+) |