fam102bb (fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256)


Basic Information

Item Value
gene id fam102bb
gene name fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1293782 ~ 1332827 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928048.2
ACAGTGACGTCTCTCACCCAGGGGTCTACACAGCGCTGGCGAGAAgcagctgtctgtctgctgtCACTGAGCTCAGCTCACTGCGCGTTTAGGACGCAGCGCTGGAGCTGTGTGAGCTAATGGAGGACCTTTGGGAAGATCTTGACGTTGTCACAACGCTAACAGTGCTAGTAGTGTAAGCTAGCGAGGCGGTTAGCAGCAGCTTAGCTTCACCCAGTTCCTCTGATACGAAAGTGTCGTGGTGCGTCTACAAGGAGGGACCAATTAACcatgatgaagaaaaagaaattcaagTTTAAAGTTGATTTTGAGCTGGACGAGCTGTCTTCGGTGCCGTTCGTGAACGGGGTCCTGTTCTGTAAAATCCGTCTGCTGGACGGCGGGTTTTCGGAGGAATCATCACGAGAAATGGTCCAGGCAAACTGTGTGCGCTGGAGAACAAGGTTCTCGTTTCCATGTAAAATGAGCGCCAGTGCTGGAACAGGAGTTCTTGATCCTTGCATATGTCGTGTTTCTGTCAGAAAGGAACTGAAAGGTGGGAAGACTTATGCAAAGCTGGGCTTTGCTGATCTGAACCTGGCTGAGTTTGCAGGATCTGGGAGCACCACACGCCGCTGTTTACTAGAGGGCTATGACACCAAGAACACCAGGCAGGACAATTCCATTCTCAAGGTGATCATCTGTACTCATCTTATGTCTGGAGACCCCTGTTTCAAAACACCTCCATCCACTGCCACAGTGATCGGGATCCAGGGGGATGGAGAGAGTCTGCTGGAAGAGCGAAGAGGTGGAGACACCCAAAAACCTTTCCTGGGGCTCTCGGAAACCACAGGCAAGTGTGGCTCTCTGCCAGaggagctgggtgtgtgtggtcattCCCGAACCTCCAGCTATGCTAGTCAGCAGTCTAAAGTATCAGGCTACAGCACTGGTCACTCTCGCTCCTCCAGCCTAACAGAGTTCACCCATAAGAGGAACACATCAGTTGGTAGCGCATCCACAGGCATTGCTAGCATCCCTGAGCCCAGTGAGGAGAGCCCGAGCTCCATAgtgcctgctgctgctgccctTGGAGCCTGTAGCACCCTGTCAGTAAACCCTGCTACACCAGACCGAACTTCCAGCAGGCACCCGATGAAGCAGGACTCGATGGAATCTCAGCTGAAGCGGGTGGACGCAACTAGGGTTGATGCTGATGATGTGGTGGAGAAAATCCTGCAGAGCCAAGACTTCACTCCTGGCATTTTTGACTCTAGCACTGAAGAGGAGGGTCTTCGTTTATTTGTGGGTCCTGGAGGAAGCACAGCACTTGGCAGCCATCATCTACCTGCCAGGGTTGGTGCTGGTGCCTACGAACAAGTGGTGATCAAGCGCTAGAGCTGGAAAGTGCCAAGTAGAGAGGTGGCACAAACCAAAGTACAGGAGAGAGGAAGGGCTCTCCAACCTCCCTTCTTTCCAGCAGTGTGCCATCCATTTACTGCTGGTGGAGCCTAAGGATTTTCAAAGAGCAGCCTCTGCCATCATTGTGGAGGCATGGGCTCCTCTGAATCCTGGGGTATCCCAACTTCTTTCCAATCCCAACACTCCTTGCTTTCTTCTGTGACTCACCCTTAAAACATTCAACTAAGGAGGGAAACTATTCTTACATGttggaaaagaaaacaatcaTTGCAGTGTTTTGCTTGGTTGGCAGTGGTGTTCCAGGTTTTGTCACCTGTGTGGTGAGGATTTTAACTCTTCATTGGATCTTGTGTATTCAGGGGTGTGGGTTCAcatatttaaagttttaatatATGCTCATATTCAGACGAGTCATGCATCTGCATGTCAGTATTTGTGTGTAGATGAGAATTGCGGATGCAGTGCTGCAGAGTTCTGGTGAAGTTTACATCACCATCATGTAGTGCTTCCTTTGGCTGAGCTCATTACACTAAGGGGAAATTGAACTGACTAGCTGGCATCGGGGAGGAAAGTTTGACTTTAGCAAAGAGAATTAGTGGCACTCACTGAACAAAGTGTCacctttacatttaaataaatgagaaataaattcTGCTAGCACTTAGTAGTATAATAGTTTGCATAGTTAGGCTGTAGGCCCAGATTTGGACATTAGTTCATCTTTTGTCAGACATGGACTGTTTTCAGCTGTTCTATTGTTCTTGGTTGTCAATGTGCAGTTCAGTTTGAgtctaaatgtttaaaaaaaaaaaaa

Function

symbol description
fam102bb Orthologous to human FAM102B (family with sequence similarity 102 member B).
fam102b Orthologous to human FAM102B (family with sequence similarity 102 member B).

NR:

description
protein FAM102B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928048.2 True 2215 mRNA 0.49 11 1293782 1332827

Neighbor

gene id symbol gene type direction distance location
LOC117599792 NA coding upstream 85743 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 257686 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 396496 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 432292 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 460957 832360 ~ 832825 (+)
LOC117599793 LOC108257824 coding downstream 7681 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 31257 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 139355 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 143325 1476152 ~ 1478084 (+)
lmx1a LOC108257702 coding downstream 189112 1521939 ~ 1534003 (+)
G287891 NA non-coding upstream 51715 1241861 ~ 1242067 (+)
G287872 NA non-coding upstream 109419 1184083 ~ 1184363 (+)
G287817 NA non-coding upstream 286776 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 303347 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 367143 926233 ~ 926639 (+)
G287962 NA non-coding downstream 101728 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 120748 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 122143 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 123081 1455908 ~ 1456374 (+)
G288047 NA non-coding downstream 139886 1472713 ~ 1473097 (+)
LOC117599677 NA other upstream 29150 1259176 ~ 1264632 (+)
G287892 NA other upstream 50110 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 395372 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 396420 806306 ~ 897362 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 25359 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 663293 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 800331 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1152209 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2610667 3943494 ~ 3982694 (+)

Expression


Co-expression Network