sox7 (sox7,LOC107561931,LOC107701473,LOC107684791)


Basic Information

Item Value
gene id sox7
gene name sox7,LOC107561931,LOC107701473,LOC107684791
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7053958 ~ 7057627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944323.2
CCATGCACAGGGAAAGAGTGAATCACTGCTTTCGAGGAGGAGTCCTACCGAGCACACCGTTCTCACCCAAGCCGACAAACAGCCTAGCTCATCACTCAGGACAGGGAAGGACAGACACAGagcagactaacacacacagtcaggtcttACTGGGGCTTTTTTTCTCCCACACCAATCTGCAGGTGAAATCGCACGTGAGCGCAAGTCAGAGCAAAGTTTCTGAGAGAGTTTGAGACTAATTAGCGCAGGTGAAGTTTTGAGATTGGGcagagtgagagcgagagagagaggagtgcgCACATGGCTGCTCTGATTAGCGCATACTCGACATGGCCGGAGAGCTTCGAGTGCGCTTCCACGGATGGAGACGCAGCCGACGGCCGCACGAGCCACCGAGCAGCGGCGGATAAAACCCCCGAGCCCCGCATCCGCAGACCCATGAACGCCTTCATGGTGTGGGCTAAAGACGAGCGCAAAAGACTGGCGGTGCAAAACCCGGACCTTCACAACGCAGAGCTCAGCAAAATGCTGGGTAAGTCATGGAAGGCCCTGACTCCCTTGCAGAAGAGGCCGTATGTGGAGGAGGCTGAGAGGTTGCGGGTGCAGCATATGCAGGACTACCCCAACTACAAGTACCGTCCTCGTCGGAAGAAGCAGCTGAAGCGAATCTGTAAGCGTGTTGACCCAGGCTTCCTCCTGCCCGGCATTGGCCCTGACCAGAGCTCTCTGTCAGACCCGCGAGGTTGCTGTCACCCCCTGGACAAAGAAGAAGAGAGTACTGTCGGTGGGAGCAGTGGATTCTCTTCCCCCAGTGCAACTTTGCCTGGTGTGAGGGTCTTCAGGGACCCTGCAAACTCCAGCAGCAATTTTGACACATATCCTTATGGCCTTCCCACTCCACCTGAGATGTCCCCTCTTGATGTGGTAGATCATGAGCACCCGTCCTACTACTCAGCATCCAGCTCTGTCCCCCCCACCAGCTCCTGCTCATCCTCTGCTTCGGGCCCAGAGGAGCAGCGTCCCACCCCAGCTCACATGGGCAGCCCTCCTCCGTACCACCCCGAGTACTCCCATCAGTCCTCTCTCCACTGTGGTAGCACACATCTGAATCACATCCCCATGCCACACCAATGTAGTGGATCCAACCTTATTCCCACTCCTCCACTGTCCTACTACAGCACTTCGTTCTCTCAAGTCCCAGTGCACCATGGCCTCCAGGGCCACTTAGGGCAACTCTCACCCCCACCTGAGCAGGGTCACTTGGAGACGTTGGACCAGCTGAGCCAGGCTGAACTGCTGGGTGAGGTGGACCGCGATGAGTTTGACCAGTACCTGAACTCCACCAACTATCACGCTGAACAGGGCAGCATGACCGTGACAGGACACATCCAGGTAACACCAGCATCTTCTTGCCCCAGCAGCACCACAGAAACCAGTCTCATCTCTGTACTGGCCGATGCAACGGCCGCCTACTACAACAATTACAGCATTTCTTAAAGAGTGAAACAAACCAATAGACAATAATTTAAACGTCAATACAGACAAAGCCCATGGACTTCAAATGGGTCAGCAGTGTGATTGGCAGATGAACAAAGGAGGAGCGATGTAAAGAGGAAAGGAGAAGCTGCAGGACATGAATGGACACCTCAGGGATGCATAGATAAATGCTCTAAAGTTCATACCCATCTTTGTTTCCaaaaagagagaggatgagaatAAAGTGACTGGACTAACTGTTAGTCCTGCTGAAACGTTCTCAGACTTTGCCAGAGATGCTTGTATATTTGCTCTACAGCTTATTTATGTATCTAAATGTTTTGCATTAATCCATATtgtattgctgtttttttcctctaataATCATATCTTTAATACAAACctcattttttttacctcaaGGCACCATATTTAAATGAGATTGGACTCTTctgcaaattttttttccatcggACTTGGTGTTTCATGAAGGAAATTCTGTAGTCTCCCTTTTCTATCCACATccatatgaatatatattatactcataaaatgttaccaagaaaataataataatgaatattattgTATGCTGATTTAGGTTTGTggcattaatttaatttgaataaaataccAAATTTCTAATTTGATATCTCCACGCATATCAGTGCGATATCTAAGATTGTAGCTCATAAAGAAAGCTGATGTATAGTAAAGATTGGGATGCTTGTATGATCGTTATGAAGGACCGGGCATTGGCATTTTTCCTTGACAAACTGCATTGTGTATGTCGAAGTAAACACAGCACATTGACAATGTTTATTGTTTTGGACGACCTGAAAAATAATGCTTTGTAGATGCTCTAGCGTTTtgtgaaatgttaaaatgaatgttCTGAGAAGCCAGACAAAGCAGGCTCCagtgaataaaaacaacatttaaacaca

Function

symbol description
sox7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within artery development and vasculogenesis. Predicted to be located in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hindbrain; intermediate cell mass of mesoderm; and mesoderm. Orthologous to human SOX7 (SRY-box transcription factor 7).

NR:

description
PREDICTED: transcription factor SOX-7

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0001570 vasculogenesis biological_process
GO:0060840 artery development biological_process

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944323.2 True 2423 mRNA 0.48 2 7053958 7057627

Neighbor

gene id symbol gene type direction distance location
pinx1 LOC107589051 coding upstream 4625 7024007 ~ 7049333 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 50328 6987109 ~ 7003630 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 142770 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 160605 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 185927 6850356 ~ 6868031 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 38514 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 61064 7118691 ~ 7147134 (+)
znf513a LOC108257870 coding downstream 151060 7208687 ~ 7219656 (+)
atraid atraid coding downstream 188545 7246172 ~ 7249822 (+)
nme6 nme6 coding downstream 206299 7263926 ~ 7276146 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 71154 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 114339 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 120098 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 219260 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 326444 6713927 ~ 6727514 (+)
G291109 NA non-coding downstream 756 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 162679 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 203423 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 346801 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 431681 7489308 ~ 7520858 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 34272 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 893918 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1252265 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2074558 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2444357 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 719970 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 985759 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1431020 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1935886 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 2016401 9074028 ~ 9179173 (+)

Expression


Co-expression Network