rhoj (rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308)


Basic Information

Item Value
gene id rhoj
gene name rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7478282 ~ 7502438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944338.2
ACTAGAGCAGAGAAGTTGAGGATTTCCACCTTTAAAAGGCATTAGAGAAGACTGTGCGCTTTCCTCCAGTGAATAAACGAGTGGGACTGCACTGGGATTTGGCTGTTTGCCTGCAGTAGTTAAGTTTTAGTTAGCTTACTGGAACTGCAGGACCTGGACTATGTCCCCTCCTTCTGTTTGTCGCTGCTGTATTTCTGCCTAGTCTCCCTCGTTAAGTGGATTTGGACAGAGCCCCTATTGTTCCCAGCCCACTCCTGCCTAATATGGCATTCTCGAGGAAAGCCCCAGTTTCCTGAAACGAGCGACGAGAAGCCGGCGAATGGCGAAGGCTGCTCTAGAGAATGAcggagaaaatgtgaaaaatcagGACGCTTGCCGAAAGCGGTTCAGTGTTTTCAGAGTTTCGGACGCGGACACTGTGCAATGACGGGATGAAAGCTGGAGGACTGAGTGTAAATGCAGGCGCCGGTGTGTTTTGGAAGCGCGAGGGCAAACAGTGCGGCTCACCGACCTGACGGATTAGAGGCGTGAGTAGTCATCCTGAGGGTTTGGACTGGTTTAACTAAGGCCCTCGGCGTCTTGTTACAAACACAGAAGGACAGGGATTAGAGTGTTCCGTGTGCTATAAGGGAACAGAGAGGCAGGACAGCAGCAGTAGACTATCATGCCTGGCCGTAGTTCCAGAAGTAAGCAGCGTGCCGGGGCTGAGGACGCAGGGGAGAGTGGAGAGACCTTCACTACTTCTGTTAAAAAGATGCTGAAATGTGTGGTGGTCGGAGACGGAGCCGTTGGCAAGACCTGCTTACTCATGAGCTACGCCAATGACGCTTTTCCTGAGGAATATGTACCGACTGTGTTCGACCATTACGCAGtaaatgttacAGTATCTGGCAGACAGCACTTGTTGGGGTTGTACGACACAGCTGGGCAGGAAGACTACAACCAGCTGCGGCCCCTTTCCTACCCCAACACTGACGTGTTCCTCATCTGCTTCTCTGTGGTGAACCCGGCCTCATATTACAACGTGCAGGAGGAGTGGGTTCCCGAGCTCAAGTCTTGCATGCCTCATGTGCCATACATCCTCATAGGCACACAGATTGACTTGCGAGACGATCCAAAGACACTGGCCCGTTTGCTCCAAATGAAGGAGAAACCACTGACATATGAGCAAGGGCTCAAGCTGGCCAGAGAGATTGGTGCACAGTGCTACCTCGAGTGTTCAGCCCTGACCCAGAAGGGACTAAAGACAGTGTTTGACGAGGCCATCCTGACAATCTTCAGCCCTAAGAAACAGAAGAGGTGCTGTATATCATGCAGGAGCTGCTGTACTATTGCATGATCAAAGCGCCATGAGGCATATCACCCAGTGAACATCAGCAAACATCCTGAAATCAGTCTATATAAGGCAGGAATGAGACACAGCCAAGTTCCTTCAGTACCTGAAGGAGGAAATGAGACACAGCCAAAGGTTTTCAGGACCTCCTGCTCAATGTGTATTCTGCATCACTACTActgtcatgaaaaaaaagaaaaatcacacttCAGTTccttattaataattttctgcCCTCCAAGGTTTGAGCCTTTTCAGCCGTTTTCTCATATGTTCTGTAGAGTACATTTCCTGGACTCGCACAGACGTTGACACTAAAAAACAAGACATGCTACACTGAATTGGAGTGGATCTGAATGAAAGCAATGTGTATACCTGCTCTGCTTATATTTAACTCCTAAGatacagactgtgtgataaaTGAGTTTCCTTTTGGGATTTGGAAACTCAAAACTCTCTATATAGATGATTATATGGTCTTTGCTCGTTACAAGTGCCTCGATCAACCGCCAGTCATTCTGTTTGTGCTCATGCCAAAGTCTGCTTTCTCACCTTAAGCTTTAGACAGGGATACAGGTCTCTGAATTGCCACAGGATGACTTCCCCAATTACCAGTATAAAAAAAGTCTTGTTTTCCAGCCATGGGCTATTTTAAGTTTCATACATTATAGGCTTTTCAAAGGCCTGTGAAACAAATGTTGAAAATCCATTCCTCCGTAAAGGGTGATTTTCTTGCTTTTGCCTCAGATCAATAACATGCTCTTTTTTGCAGCCATGGTCTGAGATAGTTAATAAGGGAAATTCTCAAAGGCTGGACAAATCATCAATAAGGGGAGCAGATACAGACAGGGAATAGTAGAAATGGGGAAACCCAACACAATTTAGTTTCCAAGAGGGCCATTTAAAATGAGTGTTTCAAACAACACTTAACCCCAACAGTGCTACGCAGTAAATTGCTCATCCTCCTAAAACACAGTCATGCAGGTTAAATGTTCTCATACCCAAGTATCTCTCTAAGTTTCCAGGAGAGAATCTTTTCCAAAACTATCCAGAATTTCAGtagcagaggtgccaacatctacATCCAACATCTACCATGGAAGCACAGGAGCCACCTGAAAACtaggcttttttccccccattttctccctaattccCACCTACGGAGGACActttggctagtgtcactgtgattgacacgGGACAGACAGTAATGcccatccttcccacccagaaACCACAGCAAATTTTTTGTTCTCTTGGCTCCTGTCTATGGATAGCTgaggcatcatcaggatttgaactcattttctgacctgtgaattcataAGCCTCTGTCAAGAAGATGGGACTGTGGTATCTGACTGCTTAAAAAAACATAGGAGgtgcttattattaagtagtgGATACCCAGATTTTTGCCTCgctgttttcttggcacacatctttaaaaaaaaattagctgcCTCATCCACTGACAGGgcttttttttgataaaattcAATTGCTTCTCTCTGCCTGCTTGGATTTTCTTGTTGGCACTTTTGCAATAGTGGTGCTATGAAAATCCTCAGGGCGTGAAGCAGATGCTTTTAGTGTCTGTACTTTACAACTGTACATATATCAACACAACAAAGACACAAGATTTTACCAAAAGTCAAGCCTCTATTGTTATCTCCTACAGCAATCATATACTGTTTTATTGCTCCCTTCTGCCAAATCCACCTCCTCATTTGACCTGATTTAAGAACAACCTAAACACATAAAGCTTTGTCTTCATTCCTCATCCTTTTCCAAAGGTCTTTTGGAGCAGCCAGGGGTCTAGATCCTTTCCAGCAAGAGCTTTAGTGTGTTCCgtcttaataaaatataatcatggCCATGAACCATTAAAAAATGGAACAGTGCAGAAGTTTAGACACATTCTCACATTCACTTGTAGCTTTCCAGTGTCTGAAAtgacaccaaacacacacatctgtactCAGTGCTGTTTAAATGCACACCTGCACTGGCACTAAACACTGGTTGCTGTTATGTGGCACCTCAGGGACGATTTCTGGAGCGAGCCACCTCCTCGTGAAGATGAGGAGAACGGCCCCTTACACACAGGAAGAATGAGCCTGAATCCACGTGCCTTCCATGTAGCACAGAGTtagtttattttcttcttttcagacACTGTGCCTTACATCATCCTATGCAACAAATTGTATACTGTAATCATACACAGAAGACCAGCATTAGCCCTGGCCACATCAACTATAACTTGAACTGTGTACttgtatcctttttttttatttagaatgtGGTgagaattacatttttttgtatatgtaaatgtattggTTTGTACATCATACATAAAGACAGCAGTTTTATTTACTAAATCGGTATATCTAATAAACCGGCAACTTGGTGTATGACTGCTTTTCttctcaaatatatatttatagcttGTCCATATCAGCTGTGATTAAAACTTGTGAACAAACTGAATTGTCTAGCTTTGTTTAAGATGccatttacaaaattattttcagCAGATTACACAGTGCCATGCTGATAGTATATAATAGTAAAATGCTATGACAATTTGTACATCATCCATAAGACACAAAGACTTGTAATCCCGCACAGAAGTTTATCACTGTTGCAATGTAGATATAGTTGTACTGTACCAAGGAGCTGTAAATGTTCAGTTTAGGTTCCACGATAGGggtgccatttagcccttgtCAAATGAAACCATTAAAACATGTTAACCCATCTCTGgaaaaa

Function

symbol description
rhoj Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOJ (ras homolog family member J).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoJ-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07864 RHOJ, TCL; Ras homolog gene family, member J

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944338.2 True 4114 mRNA 0.43 5 7478282 7502438

Neighbor

gene id symbol gene type direction distance location
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 121368 7348155 ~ 7356914 (+)
si:ch211-142k18.1 LOC108257612 coding upstream 133367 7339079 ~ 7344915 (+)
nme6 nme6 coding upstream 202136 7263926 ~ 7276146 (+)
atraid atraid coding upstream 228460 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 258626 7208687 ~ 7219656 (+)
trnac-gca_25 NA coding downstream 86930 7589368 ~ 7589439 (+)
six4b LOC108258176,LOC108434989 coding downstream 120783 7623221 ~ 7629922 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 133747 7636185 ~ 7639104 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 221868 7724306 ~ 7767694 (+)
rd3l LOC108257848 coding downstream 272054 7774492 ~ 7776361 (+)
G291380 NA non-coding upstream 73177 7404428 ~ 7405105 (+)
G291300 NA non-coding upstream 216171 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 251055 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 419699 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 495478 6981963 ~ 6982804 (+)
G291434 NA non-coding downstream 19486 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 108049 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 162691 7665129 ~ 7666009 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding downstream 164481 7666919 ~ 7667805 (+)
G291644 NA non-coding downstream 330892 7833330 ~ 7837080 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 458596 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1318242 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1676589 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2498882 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2868681 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 275159 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 540948 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 986209 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1491075 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1571590 9074028 ~ 9179173 (+)

Expression


Co-expression Network