plpp3 (plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212)


Basic Information

Item Value
gene id plpp3
gene name plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5542956 ~ 5575570 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944339.1
ATGCAGTCGTACATGTACGAGAAAGCGATGGCACCCGAGACGAGAAACGGCGGCACCGCGACATTCAGCAGCAACGGCACCGGCACAGGCAGGAGGAAGCTGCTGATAGTCCTGGATATCATCTGCCTTCTTTTAGCTGCCCTGCCTTTCCTGTTAATTGAAACTAGCATGATCGAGCCGTATCAACGCGGGTTTTACTGCAGTGACCAGTCCATCCGGTATCCTTATAAAAACGGAGACACCATAAGCGATGCCGTGCTCTGTCTCGCTGGCATTCTTATTGCCATCGTCTCTATTGTGATTGGCGAGTGCTATAGGATCCGTTACCTGAAGCAGGGCTCACACTCGTTTGTGGGAAACCCGTACGTCTCTGCCCTTTACCGGCAGGTAGGCGTGTTCATCTTCGGCTGCGCAATCAGCCAGTCATTCACAGACATCGCCAAGGTGTCTGTGGGGCGCATGAGGCCACACTTTCTTGAAGTGTGCAAGCTGGACTACTCACAAATCAACTGCTCTGATGGCTATATCACTGACTATGTGTGCTTGGGCGACCCCAGCAAGGTGCAGGAGGCGAGgAAATCCTTCTTCTCTGGACATGCCTCATTTTCAATGTACACCATGCTGTATCTAGCTTTCTACCTGCAGTCTCGGTTTACTTGGCGTGGAGCTCGTCTCCTGAGACCGCTGGTCCAGTTCACCCTTCTGATGATGGCCTTTTACACCGGACTGTCTCGTGTTTCAGACCATAAGCACCATCCCACTGACGTGCTTGCTGGCTTTGTACAAGGAGCACTGGTGGCCTACTGCATAGTCTTCTATGTGTCAGACCTGTTTAAGCCCAAAGTCAAGACCGTCAGTCCTCCACCATCACCAATCAAGAAAGAACTCCTGCCCTCCGCTGACATCATAGACAGGAACAACCATCACAACATGGTGTGAGAGGAGGATACGGGAGGAAGCATCCCTAGAATTCCATCATACCTTTGAAGAACCTGAAGAGCCACCTGTGAATGAAGAGACGCAGCATATGCGCTGctgctgtctctttctctcatctgaCAGTAGAATGTAGGGGCAGGAGACagagacttttttattttactattgaGACTctctatttttgtattattacaaACCTTGCTGTTTCTTATTTGAGCCCAATTTATGAAAGCTAAACAATCATAAGAAAAGTCGTTCATTTTTGGGAGGTTGTTCCCAAAGCAGCAGGGACTAAATGGGCCTGTAACTTGCTTTCCAATACACTAAATGGAGTGAAATGCAGAAAGCAAATGGGCCACATTAATAATGGGGCTGAAAGAAGGCAAAACATGtactaatgaatgaatggatgcatGGCAAATGAATGAAGAGTGTGACTGTGAggctggtcatgtgacctctctctttctctttttaccccttttcctctctcttgtcTCTGAGGCCTTTCGCCAGTATAAGACAACAAATTCCTTAGTTATAGGAATGATACTTTATTAGCTGCAATGTTACTAGCACAGATATATTAA
>XM_026944340.1
ATGCAGTCGTACATGTACGAGAAAGCGATGGCACCCGAGACGAGAAACGGCGGCACCGCGACATTCAGCAGCAACGGCACCGGCACAGGCAGGAGGAAGCTGCTGATAGTCCTGGATATCATCTGCCTTCTTTTAGTCATGCTGCCCTCCATGGTGCTGCACAAGTCTTCAATACAGCCGTACCAGCGCGGCTTCTACTGCACAGACGACAGCATCCGCTACGACTATAAGAACAGCACTGTGCCCTCTTCCGTGCTGATGGCTGTGGGCGTCCTCCTGCCCCTCGCCAGTATTGTGATTGGCGAGTGCTATAGGATCCGTTACCTGAAGCAGGGCTCACACTCGTTTGTGGGAAACCCGTACGTCTCTGCCCTTTACCGGCAGGTAGGCGTGTTCATCTTCGGCTGCGCAATCAGCCAGTCATTCACAGACATCGCCAAGGTGTCTGTGGGGCGCATGAGGCCACACTTTCTTGAAGTGTGCAAGCTGGACTACTCACAAATCAACTGCTCTGATGGCTATATCACTGACTATGTGTGCTTGGGCGACCCCAGCAAGGTGCAGGAGGCGAGgAAATCCTTCTTCTCTGGACATGCCTCATTTTCAATGTACACCATGCTGTATCTAGCTTTCTACCTGCAGTCTCGGTTTACTTGGCGTGGAGCTCGTCTCCTGAGACCGCTGGTCCAGTTCACCCTTCTGATGATGGCCTTTTACACCGGACTGTCTCGTGTTTCAGACCATAAGCACCATCCCACTGACGTGCTTGCTGGCTTTGTACAAGGAGCACTGGTGGCCTACTGCATAGTCTTCTATGTGTCAGACCTGTTTAAGCCCAAAGTCAAGACCGTCAGTCCTCCACCATCACCAATCAAGAAAGAACTCCTGCCCTCCGCTGACATCATAGACAGGAACAACCATCACAACATGGTGTGA

Function

symbol description
plpp3 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in canonical Wnt signaling pathway; phospholipid dephosphorylation; and phospholipid metabolic process. Predicted to act upstream of or within regulation of Wnt signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in somite and vasculature. Orthologous to human PLPP3 (phospholipid phosphatase 3).

NR:

description
PREDICTED: lipid phosphate phosphohydrolase 3 isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01080 PLPP1_2_3; phosphatidate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944339.1 True 1529 mRNA 0.47 6 5542956 5575570
XM_026944340.1 False 936 mRNA 0.53 6 5542956 5574980

Neighbor

gene id symbol gene type direction distance location
LOC113545193 NA coding upstream 22323 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 40552 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 445479 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 465038 5066310 ~ 5077918 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding upstream 478807 5052030 ~ 5064149 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 268463 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 288021 5863591 ~ 5868013 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 299618 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 329124 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 382861 5958431 ~ 5961185 (+)
LOC113545370 NA non-coding upstream 236054 5302630 ~ 5306902 (+)
G290192 NA non-coding upstream 289233 5253517 ~ 5253723 (+)
LOC117599804 NA non-coding upstream 392031 5147185 ~ 5150925 (+)
G290030 NA non-coding upstream 635144 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 646569 4896122 ~ 4896387 (+)
LOC117599803 NA non-coding downstream 4248 5579818 ~ 5588495 (+)
G290419 NA non-coding downstream 71807 5647377 ~ 5655687 (+)
G290562 NA non-coding downstream 157161 5732731 ~ 5734300 (+)
G290566 NA non-coding downstream 226228 5801798 ~ 5804340 (+)
G290567 NA non-coding downstream 229106 5804676 ~ 5805588 (+)
dnm3a dnm3,dnm3a other upstream 563556 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 933355 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1204657 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1233027 4248330 ~ 4309929 (+)
G289531 NA other upstream 1472589 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 159903 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 560350 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1437172 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2202027 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2467816 8043386 ~ 8074444 (+)

Expression


Co-expression Network