znf513a (LOC108257870)


Basic Information

Item Value
gene id znf513a
gene name LOC108257870
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7208687 ~ 7219656 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944342.2
CACGTAAAATTCCGGAAGAAAATGTATACAATGGCAATCTAGAAATCAATTAAGTTATGAAAAAAAGAGCATTAATTGCCTTTCTTCGTGGCTGACGTGATATGGCATGGCGGACAGCTCGTATTAACCTCCTCTGACACAACGCCATTTTACCCGCATGCGAAGCGTCATCTGAGGGCTAAAGGAGAAGCAGGAGgaagAATGAGCTGATTGTAGCGGGCTTGTGCTAGAGGCTACAAATCAGGAAAGGCTGGCTGGAAGATGCCAAGaagaaaacaacagaatccacaacCTGTAAagtTGGATTCTGAAGATGGCATAAGCATTAATCCTGCAACAAACCTTACTTTTGAGAGTGACTTTCTTCTGGGCCAAGACCTTGACTTCTCAGATGCTGATAACGGCAAAATCTTAGGTCTGGAGAAGTTTTCAGCTAATATCAGTCTGCCTAGTTTCCAACTGGGTGACGAAGAGAGCTCCTCCTTCAGCCACCTCAGCATGGAGAGTGACACCCACGACGTCCACACTGCTGAGAACGAGCGAGAGGGTGTGAGATCCGAGCCTGCATTCCCTCTCTACGTCTCCTGCAGGGGCTGCGATCAGCTCCTTGATGAGGATGAGCACTCATGTCTGCGCTGCTCTAAACGGGATGGAACCAGCATAGGGGACAGGAGTGTCCATGTAGGAGCACAGCCTGTGCTCAAAGGGGCAGATGGAGAGGGAGCAGGACCTGAGAATGGCCAGCAGAAGCTGAACTCTTGTCCACTGTGTGGCTTCTCCTCACGTTACACCAACCACGTAAAGAGGCACATGAAGACGCACAACGGCGAGAAGCCATACCGCTGCTCGCTGTGCTCATACGCCTCCGCACAGCTGGTCAACCTGCAGCGCCATTTACGCATCCACACCGGAGAAAAACCCTACAAGTGTGAGCACTGCACATTCGCCTGCAGTTCCCTGGGCAACCTGAAAAGGCACCAGCGCATGCACACAGTTGCAAATCCtgctcagaatacacaacagcGTATGCACACTGCCATAAATCCAGGCCAAAATACACACCCGAGTATGCACACAGTCGCAAACCCTGCACAGAATACACAGCGGATGATGAGTGGCCTCAGCCTTCGAGGTCCTGTTGGATGTCAGAGCCTAAAAGAGGATGCTCCCCGTGCCTCGAGGGAAGTGCTTCAGTCCTCAGAAATGAAAGGGAATTTGGGCATTGGCAGTGACAGCGGATATCTCAAGGCTTTTGCGAggctgaagtcagagcagcagTCGTGCACCCGGGCACAGCCTGGCGTTCTTCCTCCTCTGCTCTTCCCTTTCACGTGCAGGCTGTGTGGCCTGGTACTGGATGGTGAGGATGGGTCGTCAGCGCAGATCTGTGCCAAGTGCACCCTGGAAATGCTGACTAAAGATGCAGCAGGCAGCGCCAGCGAGCGTGGACACAGAGGGGACAGGGTGTACACGTGTGCCGCCTGCCCGTTCCTCACACACTACCCCAACCACCTGGCCCGGCACATGAAGACACACAGCGGCGAGAAGCCCTATAAGTGCCCGCAGTGCCCCTACGCTTCAGCCCACTTCGACAACCTGAAGCGGCACCACCGCGTGCACACGGGCGAAAAGCCCTACAAGTGCCACCTGTGTGACTACGCCTGCGGCAATCTGGCAAACCTAAAGCGGCACCAGCGTGTTCACTCGGGCGCCAAACCTTTCCAGTGCAGCGTGTGCAGCTACAGCTGCAACCAGAGCATGAACCTGAAGAGGCACATGCTGCGTCACACAGGTGAGAAGCCACACAAGTGCCATGCGTGCACTTACACCACAGGCCACTGGGACAACTACAAGCGGCACCAGAAGAAACACGTAGCAGGAACAGACGAGTGGGATAAAGTGCCGCTGCCTGCCAATGAGGAAGAGGCAGAGattgatgaggaggaggaggtgtagcCTAGCAACGGGAGGAACAATTGTAGTATGAtaagattatttaaaattgaGATGAAGTGTTACAGTACCAGCATAAGCTtagttcttgttttcttttgttttgttttttttccccctttgtgTCATTATGATTCTTGAATAGGTTCAAGCTGCTAAACAGACTTGTGCacaagattgaaaaaaaaaaaaaacttttcgtTACCTTTGCATAGGGTTGGAAGGGTAATTCAAGACTCTGGATCAGAGTGCCCTTGCTTCGTCAGTGCCATACAGACATTTTGTAATGCTACCTAGATGAAATCTAATTTCTCCTTCATTGTATATCTTGCACGGATGTTCATTGCTCTGTAGTGCCACAGAGCCGTCATTACTGGCTGAACCTTCTGTGGATTCTCTGAGGCCTTTGCTGCTCAAATGGATAGTTTTAAACCTTCACTACATCCCTTTATAGTGCCAAAACGGAGTCCTAACCACTGCAGCTTTTGCAACttcaaatgtcattttatttactggCGACATTGTTGCTCCTTGGTTGTATGTCTTAACTGTGAAATTTTGTCTGATGTTAAAATGGTGCATAGTAAGCATTAGAATGTTGTGATTTATGTAAAGCACTTATTTTTGTATGTCTTTTGTTCGTTTAAAAGAATGTTTGGCATGCATTTGCCATCAGTGGCATTAACTTAAAGACAAGGGACCATGAATTCCATATGCAGTTTATAACCTTCAGGTTGCCAAGAAGTGATAGAGATGGATTCCTTTCGATGTGTGGTGCTTAAGTGCTCTCTTGTAATTATGCAGTCGTTTCATAATTGCCTTAAATATCCTGGAATAAAGTACTCTGTGGTGAGA

Function

NR:

description
PREDICTED: zinc finger protein 513 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944342.2 True 2808 mRNA 0.49 5 7208687 7219656

Neighbor

gene id symbol gene type direction distance location
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 61553 7118691 ~ 7147134 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 102671 7096141 ~ 7106016 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 151060 7053958 ~ 7057627 (+)
pinx1 LOC107589051 coding upstream 159354 7024007 ~ 7049333 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 205057 6987109 ~ 7003630 (+)
atraid atraid coding downstream 26516 7246172 ~ 7249822 (+)
nme6 nme6 coding downstream 44270 7263926 ~ 7276146 (+)
si:ch211-142k18.1 LOC108257612 coding downstream 119423 7339079 ~ 7344915 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 128499 7348155 ~ 7356914 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 258626 7478282 ~ 7502438 (+)
G291109 NA non-coding upstream 150104 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 225883 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 269068 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 274827 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 373989 6834407 ~ 6834698 (+)
G291274 snx17,LOC107746210 non-coding downstream 650 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 41394 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 184772 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 269652 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 302268 7521924 ~ 7522123 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 189001 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1048647 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1406994 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2229287 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2599086 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 557941 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 823730 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1268991 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1773857 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1854372 9074028 ~ 9179173 (+)

Expression


Co-expression Network