six4b (LOC108258176,LOC108434989)


Basic Information

Item Value
gene id six4b
gene name LOC108258176,LOC108434989
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7623221 ~ 7629922 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944345.2
CGAGGCGGCCAATCGGCGGCCGTGCGACTGTTCGGACCCCCTTTCCCATACGGACTGCAGAGTTAAACTCTCGCTGGAGCTCTGAAACTAAGATCTTTATTCTCTCTGCGCGGCGACCGGACACCTGATCGCGCTCGGATGGAGGGGTGAAACCCGATCTTCCGAATGTACTGCTGCCCACGAAACCCGGAGGAGTGACTCACCATCAAGGAcacgtgaaaaaaaaacatgtcttcTTCCTCGAGTGAGGTGATTGGCGCCGATGAGATCAAGAGGGAGAGCTCGAGGGCACTGGAGACTCGGGGGAGTGTCAAGCTGGCCGCGCTCGATCCGGCCGGGTTGCCCATGGAGAACTCTGGCTCGGCGGCGGTGGCAGTTGAATGCGCACCGGCCTCTCTCGCGTTCTCACCGGAACAagtggcgtgtgtgtgcgaGGCACTGCTGCAGGGCGGCAATGTGGAGCGCCTGGCCCGCTTCTTATGGTCGCTACCGCAGAGTGAGCTGCTGCGCGGCAACGAGAGCATCCTTAAGGCGCAGGCCATAGTCGCGTTCCATCAGGCGCGCTACCAGGAGCTCTACTGCATCTTAGAGAACCACAACTTCAGCCCGTGCAACCACTCGTCCCTGCAGGACATGTGGTACAAGGCGCGCTACACCGAGGCGGAGAAGGCACGCGGCAGGCCGCTGGGCGCCGTGGACAAATACCGACTGCGCAGGAAGTATCCGCTGCCGCGCACCATCTGGGACGGCGAAGAGACCGTGTACTGCTTCAAGGAGAGGTCGAGGAACGCGCTCAAGGACATGTACAAGCGCAACCGTTACCCGTCGCCGGCGGAGAAGCGGAACCTCGCCAAAATCACTGGACTTTCTTTGACGCAGGTCAGCAACTGGTTCAAAAACAGGAGACAGCGGGACCGGAACCCATCAGAAGCGCAGTCCAAAAGTGAATCAGATGGCAATCATAGCACAGAAGATGAGTCAAGTAAGGGACAGGAAGAGCTTTCTCCTCGTCCTCTCTCTAGCGGCTCTGCTGGTTCAGTTGCCCTTGGCACTAGCCCTGCTGTAGCATACTCCGATGGTGCCACCACTGTCATCCAGCAGATCGGGGATGCCAAAATGTCTCCACTTGCCGCAGGAATGGGTTTCAATGGCGACCTGACAAACACCAACTCCCACTATCTTAATGGTGGAGCATATGTtcaatcacatggcagcaacAGTCTCCTGAATGGACTTGGAACCACAAGTGGTCACTTCTTGACCTTCGATCCCCAGAGGGTCTCCCATGCCCAAGAGAGGCTACTGGGTGGCTCCTCTGTGTCTTATGCCTCTTATTCAATGGGGGCTCCAGAAACCACAGTTGGAAAACTAGAGGGTATGCAGCCTCTGGCGTCACATTCAGAACATGGAGCAGTGCCTTCAGTCGTCACCTTTGCCACCacgtcctcttcctcctctccctctggAGCTCCTCATCTCAGCAGCTACAGCATGGTCAACCTTCCTGGGGTTGAGAACAACCTGGGTCTTCCGCCTTTACTGCTACCGCCATCTTCTACAGCACCCTCTCACGCAGGCTCAGCTCCACTGGACGGGGTGGTCAGCAACTCGTCCCAGCACTCAGGCCAACCCCTGCTCTACACGCTCAACCAGGCTGTCAAGCAGGAGCCTTTGGACATTGGGGTGGCCTACACATATCCCTCCAGTGTTCCCCTAGACCAAAGCAGCAACTTGGGCTACACGgcatccctctttctctccaccAACCTCAGCCACTCACCCAACAACGGAGGCCCCCTGGCCCCTGCAGCCACAGCTGCTATCACCTCTGTGCTCTCCAGCACAGAGGGTCACTCCGGTCTGACTCACAATGCCCGCGGCCTCCAGGAAACTGGGGGAGCTCTGCCCTCAGACTACAGGGCACAGGAAGCACAGCTGCCCCTGTCTGACAATCTTGAGACCCCTGCAGGTACTGGTGAGGGCCCTCCTGGAGTGTGTGGTGATCTGGACATGGAGGGAAAAGAGCTGGCCAAGCTGCAGACTGTTCAGATGGACGAGGACAGcagtgacctctgacccctgtAATCACAACAACTGAAGAGCTGTATTTCATTAGCTGTTGATTTTCTTGCACTGCAGCATAACTATAAAAGTCTCCTAAGCACACATCAATCTTTTTATACTTTGTCGCTTTTACGATAATGTATGCAAGATGTGTGCAAATAGGTGGAACACATGAACAGTGCCTTTGTATCCCTAAATAAATGTAGCCTCATGTCCTGACTTGCACTCGGATGGCTGCAGAATGTACTTGTTGATGCACTGACCCTGAACAAGATGTCTCAGGCCTGTCTTTTCTCTCCTATTTGCAGTAATGGAGATTTTAattcagagagagatggagagtgaTAGAGCATGgtggactgagagagagaaagagagagagagagagagaaagagagtataAAATAGCAGATGTGTTTGGTGAGTCTTGCAAATGTTTCTGCACTATCATTGCAGCTTCATACTGATTCTTTATTTTACTCTCCAAAATTTTATCGAAGCAcagatgtttaattttttgttgaCGTTtggtttttgtatttaattttttgaagCTTGAAATGGCAATGTGAACAAcgtttttgttatattttgctttttaagcAATTTAAGTTCAGCAAGGACTTAACCACAGGTGAGAAATCTTTGTCCTTGATATGAGAATACTGTATTATTGGGCATTCAGCAACTGGTCTCATGTACCTTCcttaaagaaatgaaatcttTACAGTAGTAAATGGTTTCAGTTGTAAGAAAAA
>XM_026944346.2
TCGAGGCGGCCAATCGGCGGCCGTGCGACTGTTCGGACCCCCTTTCCCATACGGACTGCAGAGTTAAACTCTCGCTGGAGCTCTGAAACTAAGATCTTTATTCTCTCTGCGCGGCGACCGGACACCTGATCGCGCTCGGATGGAGGGGTGAAACCCGATCTTCCGAATGTACTGCTGCCCACGAAACCCGGAGGAGTGACTCACCATCAAGGAcacgtgaaaaaaaaacatgtcttcTTCCTCGAGTGAGGTGATTGGCGCCGATGAGATCAAGAGGGAGAGCTCGAGGGCACTGGAGACTCGGGGGAGTGTCAAGCTGGCCGCGCTCGATCCGGCCGGGTTGCCCATGGAGAACTCTGGCTCGGCGGCGGTGGCAGTTGAATGCGCACCGGCCTCTCTCGCGTTCTCACCGGAACAagtggcgtgtgtgtgcgaGGCACTGCTGCAGGGCGGCAATGTGGAGCGCCTGGCCCGCTTCTTATGGTCGCTACCGCAGAGTGAGCTGCTGCGCGGCAACGAGAGCATCCTTAAGGCGCAGGCCATAGTCGCGTTCCATCAGGCGCGCTACCAGGAGCTCTACTGCATCTTAGAGAACCACAACTTCAGCCCGTGCAACCACTCGTCCCTGCAGGACATGTGGTACAAGGCGCGCTACACCGAGGCGGAGAAGGCACGCGGCAGGCCGCTGGGCGCCGTGGACAAATACCGACTGCGCAGGAAGTATCCGCTGCCGCGCACCATCTGGGACGGCGAAGAGACCGTGTACTGCTTCAAGGAGAGGTCGAGGAACGCGCTCAAGGACATGTACAAGCGCAACCGTTACCCGTCGCCGGCGGAGAAGCGGAACCTCGCCAAAATCACTGGACTTTCTTTGACGCAGGTCAGCAACTGGTTCAAAAACAGGAGACAGCGGGACCGGAACCCATCAGAAGCGCAGTCCAAAAGTGAATCAGATGGCAATCATAGCACAGAAGATGAGTCAAGTAAGGGACAGGAAGAGCTTTCTCCTCGTCCTCTCTCTAGCGGCTCTGCTGGTTCAGTTGCCCTTGGCACTAGCCCTGCTGTAGCATACTCCGATGGTGCCACCACTGTCATCCAGCAGATCGGGGATGCCAAAATGTCTCCACTTGCCGCAGGAATGGGTTTCAATGGCGACCTGACAAACACCAACTCCCACTATCTTAATGGTGGAGCATATGTtcaatcacatggcagcaacAGTCTCCTGAATGGACTTGGAACCACAAGTGGTCACTTCTTGACCTTCGATCCCCAGAGGGTCTCCCATGCCCAAGAGAGGCTACTGGGTGGCTCCTCTGTGTCTTATGCCTCTTATTCAATGGGGGCTCCAGAAACCACAGTTGGAAAACTAGAGGGTATGCAGCCTCTGGCGTCACATTCAGAACATGGAGCAGTGCCTTCAGTCGTCACCTTTGCCACCacgtcctcttcctcctctccctctggAGCTCCTCATCTCAGCAGCTACAGCATGGTCAACCTTCCTGGGGTTGAGAACAACCTGGGTCTTCCGCCTTTACTGCTACCGCCATCTTCTACAGCACCCTCTCACGGCTCAGCTCCACTGGACGGGGTGGTCAGCAACTCGTCCCAGCACTCAGGCCAACCCCTGCTCTACACGCTCAACCAGGCTGTCAAGCAGGAGCCTTTGGACATTGGGGTGGCCTACACATATCCCTCCAGTGTTCCCCTAGACCAAAGCAGCAACTTGGGCTACACGgcatccctctttctctccaccAACCTCAGCCACTCACCCAACAACGGAGGCCCCCTGGCCCCTGCAGCCACAGCTGCTATCACCTCTGTGCTCTCCAGCACAGAGGGTCACTCCGGTCTGACTCACAATGCCCGCGGCCTCCAGGAAACTGGGGGAGCTCTGCCCTCAGACTACAGGGCACAGGAAGCACAGCTGCCCCTGTCTGACAATCTTGAGACCCCTGCAGGTACTGGTGAGGGCCCTCCTGGAGTGTGTGGTGATCTGGACATGGAGGGAAAAGAGCTGGCCAAGCTGCAGACTGTTCAGATGGACGAGGACAGcagtgacctctgacccctgtAATCACAACAACTGAAGAGCTGTATTTCATTAGCTGTTGATTTTCTTGCACTGCAGCATAACTATAAAAGTCTCCTAAGCACACATCAATCTTTTTATACTTTGTCGCTTTTACGATAATGTATGCAAGATGTGTGCAAATAGGTGGAACACATGAACAGTGCCTTTGTATCCCTAAATAAATGTAGCCTCATGTCCTGACTTGCACTCGGATGGCTGCAGAATGTACTTGTTGATGCACTGACCCTGAACAAGATGTCTCAGGCCTGTCTTTTCTCTCCTATTTGCAGTAATGGAGATTTTAattcagagagagatggagagtgaTAGAGCATGgtggactgagagagagaaagagagagagagagagagaaagagagtataAAATAGCAGATGTGTTTGGTGAGTCTTGCAAATGTTTCTGCACTATCATTGCAGCTTCATACTGATTCTTTATTTTACTCTCCAAAATTTTATCGAAGCAcagatgtttaattttttgttgaCGTTtggtttttgtatttaattttttgaagCTTGAAATGGCAATGTGAACAAcgtttttgttatattttgctttttaagcAATTTAAGTTCAGCAAGGACTTAACCACAGGTGAGAAATCTTTGTCCTTGATATGAGAATACTGTATTATTGGGCATTCAGCAACTGGTCTCATGTACCTTCcttaaagaaatgaaatcttTACAGTAGTAAATGGTTTCAGTTGTAAGAAAAA

Function

NR:

description
PREDICTED: homeobox protein SIX4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15615 SIX4; homeobox protein SIX4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944345.2 True 2822 mRNA 0.52 3 7623222 7629922
XM_026944346.2 False 2820 mRNA 0.52 3 7623221 7629922

Neighbor

gene id symbol gene type direction distance location
trnac-gca_25 NA coding upstream 33782 7589368 ~ 7589439 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding upstream 120783 7478282 ~ 7502438 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 266307 7348155 ~ 7356914 (+)
si:ch211-142k18.1 LOC108257612 coding upstream 278306 7339079 ~ 7344915 (+)
nme6 nme6 coding upstream 347075 7263926 ~ 7276146 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 6263 7636185 ~ 7639104 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 94384 7724306 ~ 7767694 (+)
rd3l LOC108257848 coding downstream 144570 7774492 ~ 7776361 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 155500 7785422 ~ 7832026 (+)
trnaa-cgc_5 NA coding downstream 253296 7883218 ~ 7883289 (+)
LOC113545343 NA non-coding upstream 8241 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 101098 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 102363 7489308 ~ 7520858 (+)
G291380 NA non-coding upstream 218116 7404428 ~ 7405105 (+)
G291300 NA non-coding upstream 361110 7261050 ~ 7262111 (+)
G291581 NA non-coding downstream 35207 7665129 ~ 7666009 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding downstream 36997 7666919 ~ 7667805 (+)
G291644 NA non-coding downstream 203408 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 316030 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 496099 8126021 ~ 8127898 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 603535 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1463181 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1821528 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2643821 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3013620 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 147675 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 413464 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 858725 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1363591 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1444106 9074028 ~ 9179173 (+)

Expression


Co-expression Network