mettl13 (mettl13,LOC107733805,LOC107712871)


Basic Information

Item Value
gene id mettl13
gene name mettl13,LOC107733805,LOC107712871
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4932489 ~ 4939511 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944353.2
GCGCGTCCGTCAAGGAAATGTGTCCGGGTTGAAACTCCAAAACATGTGGGAAACGACATTAGAAAATTAGAATacgaagaaataaataaaatgcaggaAATATTATAGTTCAGGGCATAAGTGGTTGTAGTAGCTTATGTCTTGCATGTTGAAGGCTGCTGGTgatcagcatttaaaaaaagagtcgAGAAAGAGATTTTTAATCCAGCACCGTTTTAAAAGAAGGACATGAGTCTGTTACCCAGAACAGCCGAGGAGTTCAGCTCTGCAGATTACTGGGAACGATTTTTCCGCAAAAGGGGAGAGAAAGCTTTTGAGTGGTATGGAGACTACAACTCGCTGTGTGGCGTGCTGCACAAATACATTAAACCCCGTGAGAAGGTTTTAGTGGTGGGCTGTGGGAACTCGGAGCTAAGTGAACAGCTTTACGATGTCGGCTACCGCCACTTAACCAACATCGATATCAGCGAGACAGTTGTTGCTCACATGAACCAGCGAAACGTGCAGCGCCGTCCCGACCTCACCTTCCATCAGGTAGATGCCACTCAGACAGGTTATGACAGCGGAAGCTTCCAGGCTGCTCTGGACAAGGGAACTCTAGATGCCATGGCCTCGGAGGAGGAGGGCGTCGTGGCGAGCAAAATGCTGGCTGAGGTGGGAAGAGTTCTGGCTGTGGGCGGCCGCTACGTCTGTGTGACTCTCGCCCAGGAGCATGTGATAAAGCTGGCAGTGGAGCATTTTGCTGAAGCTGGCTTTGCCATACGTATCCACTGCCTGAGCCAGCAGAACCCGGACTTGGATTCCTCCTCATTTGCTCTTCCTGTATTCATCCTCGTCTGCACCAAGTTCCGCCAGCCACCTCCATTCAAAGTGCTGGAGATGTGCCAGGGGGAGGACGGTGCCCCGTGTAGACTGGTGTCGGTTCCTGAGCTATTAGCCGCAGTAAAGGAACGGCAGGCGTATGCACTCATGCTCCAGAAGCTGAGGGGTGCCACAGACACTGCTAGCACACCCTCCCTCACACTGTGCCACGCAGCCACGGGCCGTCCCCGATACACACTCACGGTGCAGGACAGTCCACCTTCTGCCAAAGTACCTCGTACCAACCACTTTGCTATCTTTATTGTTCCTCAGGGTCGAGAATCCGATTGGTTGTACGGTTCTGCCGAGGGTCGCGCTCAGCTAGCCGCCAGCGCAAACTTCCGCCGATTGATCATTGTTGCAATGCATCGAGACCAGGAATATAAAGACATGCAAGCAGTCCAGTCTGAGCTCTCTCCCATGGTGATGGAGCTGGCTCCTCCTGGAATGCCAGCCAATCAGCAGGTGCCGTTCTTGTCTGTAGGAGGTGACCTGGGCTGGAGAGAGGTGGTGGGCCGAGGCATCAGTGACCTAACAGGCGAGTATTCTGTTGAAGATGTCCGAGGAGAGGATGGTCATGTCTACCGTAGATTAATCTTCATGAACAACACTCAGCTGGTGCAGTCCGAAAGCCGCCTGAGATCCACAGCTACAACTGGTTCTGCTCAGAAAAAGAAGAGCAAGAAGAAGTCAAAACCCCCTGCTGCTGAAACTCCAGCTTCAGCTAACAAAAATCACATTGTAGACCGAGGATTTCTCTGTTGTACTCATCACGAGGTCATGATCGCAGGCTTTGCCATGCTAGGAAAGGAGGCCGTCAGTAATAAAGATGGCCAGGTATCAGTGTTAGTGGTGGGGCTGGGCGGTGGAGGCCTGCCCCAGTTCATACGGGACTTTGTGCCTGGTGTGCGGGTGGAGGTTGTGGAACTCGACCCGGCCGTACTGGAGGTAGCAAAGACCTGGTTTGGGTTCCAGACTGATGACAGACTGAAGGTAATCCTGGGAGATGGTCTAGAATACATCAGCATGCTAGAGAGCAAGgGGGGACATTCCTATGATGTCATCATGTTCGATGTTGACAGCAAGGACCGCTCCCTGGGCATGAGCTGCCCTCCTCCTGCTTTTGTAGAAACATCCCTATTGGAGAAAGTCTGCAAGTTGTTAACTCCTCGAGGAGTGTTTATGTTAAACTTGGTGTGTCGTGACTCAGCTCTGAGGCAGTCAGTGTTGGAGCGTTTGCAGGCCGTGTTCCTGAGTGTGCTCTCTCGCCCTATTGAGGGTGAAGTGAACGAGGTGCTGCTGTGTTCCCGGGGTGGAAGTGAACGAGACAAACCAAACACCATCCCACAGGAGCTACAGCAGGCTGCCAAAACCCTCCAGGGGACGCTGCAGAGGCACAGTCAGAATGCTCCCTTTAACCCTCAGATAGACATTACTGCAATGCTGAAGGACCTGCGAGTAGCTtgaactgaaaactgaaatcaGCTTGCTTTAAAACCAAAAGCAGATGATTTTTGATTGTCAAAACTACATCATTATCAACAACCGtgattctttgttttgttttgtgcctGATTTTCTTCCATTCTTATAAGTGCAgtttgaaatgtttaatttaacataagacctataataatcatatatcaTCAAATATATCTTATAAAACTTATAAAATGTTGCAATGCATTGAACCTGGGTaatttcaggcttctgtttacatttttcttgtcCAGAAATGAGCTCTCTACCAGATAGAACATCTGCTCACCACCTAcccctttttctttaaaaggaaATTCATGAATCATTTGCTGTTTCGGAGTGGATGGGTCAGTTGGGAAGAAGGATTTTCATTGCAATTTTgatctaaacattttttttttactgtcaaaCTACACCTCAAGACTGTCATGATCATTAGACACGGTGTGATGATGGTAAAAACTAAGCTTTTATCTTTTTTGCTCATCTGGGAAGTAAACACAGGTCACATGGCTGACTACAGTACTACATTTACAGCaattagcagatgcccttatccagagcatcttacagaagtgctttgtacaACACTACAGCTGAAAAATGGCATCCAGCTGACCTAATGGGGAAAAAGTGGTGAGGGGCAGTAGTGGCTTAGCAGCTAGGGCTTTAGATTAAAATTCGAATGGttatgagtttgaatcctggaAGCCGTCTCTGTTGGGTCCTTGAACAAAGCCCTCATCTACTTAACTCAATTTTACATAgtttttggataaaagcatctgttaaatgagtaaatgtaaatgaaacgtGGTATAAAAAGTGGTATAATAACGCAAGTCTGGACTTTTACACAATCACATATAAAGTTTCTGTTTAAAGTACTCATTTCTATTGAGTTTAATATGAGGTAATGATAATTCTGTCAATTTTACATAAACCGGCATAAATAGAATGTAgtaccactttaataggaacacatgtacacctgctcatttaggcagttatctaatcaaccaatcatgtagcagcagcacaatgcataaaatcatgcaagta

Function

symbol description
mettl13 Predicted to enable methyltransferase activity. Predicted to act upstream of or within methylation. Is expressed in brain and inner ear. Orthologous to human METTL13 (methyltransferase 13, eEF1A lysine and N-terminal methyltransferase).

NR:

description
methyltransferase-like protein 13 isoform X2

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K25166 EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944353.2 True 3405 mRNA 0.47 8 4932489 4939511

Neighbor

gene id symbol gene type direction distance location
prrc2c prrc2c,LOC107712868 coding upstream 45988 4859323 ~ 4886501 (+)
LOC113545311 LOC108257966,LOC108415675 coding upstream 77764 4847581 ~ 4854725 (+)
LOC117599802 LOC108257967 coding upstream 86455 4835086 ~ 4846034 (+)
LOC113545285 LOC108257967 coding upstream 100545 4823038 ~ 4831944 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding upstream 110478 4816687 ~ 4822011 (+)
suco suco,LOC107712873,LOC107687343 coding downstream 58637 4998148 ~ 5048442 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding downstream 112519 5052030 ~ 5064149 (+)
mysm1 mysm1 coding downstream 126799 5066310 ~ 5077918 (+)
oma1 oma1 coding downstream 139710 5079221 ~ 5097477 (+)
dab1a dab1,dab1a,LOC107581465 coding downstream 387654 5327165 ~ 5502404 (+)
G290030 NA non-coding upstream 24677 4898967 ~ 4907812 (+)
G290028 NA non-coding upstream 36102 4896122 ~ 4896387 (+)
G290009 NA non-coding upstream 117693 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 125909 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 129461 4802813 ~ 4803028 (+)
LOC117599804 NA non-coding downstream 207674 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 314006 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 363119 5302630 ~ 5306902 (+)
G290417 NA non-coding downstream 604607 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 640307 5579818 ~ 5588495 (+)
LOC113545190 NA other upstream 322888 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 594190 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 622560 4248330 ~ 4309929 (+)
G289531 NA other upstream 862122 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 944366 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 2440 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 795962 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1196409 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2073231 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2838086 7777597 ~ 7782008 (+)

Expression


Co-expression Network