si:ch211-121a2.4 (si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847)


Basic Information

Item Value
gene id si:ch211-121a2.4
gene name si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5863591 ~ 5868013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944354.2
ACTCTTTGCCACGCCCAGTCATCTACACTACAGCGTCACTGCCAGGGGCGGCTGTGATTGGAGGAGAGTCGGGGTTTCTGTTACGGAGTGGCAAAAACCGGGTCACAGGAGTTTCAGTCACCGGGAAGGGGAACGGGATCAGAGGGTACAGCACATACGAGATTGGATGGTGTCCACTGATCATGACCACGGACCAGGAGCCGCCTGTCAGTGCAAAACTTTTTCACCTTATCTTCCTCTCCACCTTTTGGGGCATGCAGATATGGGTCACCTTCATCTCTGGATTTGTCATGGACAGCCATCTAAACAGACACACCTACGGCTTTATTCAGAGTCGACTCTTCCCTTTCTATCTGCACATCGGCTCGGCCTGTGCGTTCTTCAACCTCACTATTTTTGCCATGTACCATCCCAGTGACCTGCTGGATGATAAAGAGGCCTTTCAGatctttgttttctttgtgtgtgtgactgtggcAGCCGTGAATGCCCAGTGGTTTGGCCAGTTAACCTCCGAAATCATGGCGGACATGCACGTGATTGAGCAGGCTTGTGGGCTGGGCCAGGACATTGGGCTCTCATCCAACCGCGAAGCCTACTCCAAACTGTGCGACAAAGACCCCAAGTACAAGCAGCTGAGCAACCGTCTGTGGCTTTACCACCTCCTCTCATCTTTCTGTAACATCTGCTGTATTGTGTGCAACGGGTACAGCCTTTATTACCTGGCAGAGAACCTTAATACGCTTTGATTTTCAGTCAGATCATTTTTGGGATTATATACCCCACAATGCAGTGTGtgccacattcacacacttaatATGTCTATATGCTGTCTAACAACTGATAATGAAGTCTTTAGAATTTCTTGCTCTTTCTTTACCTCTTTGTACTATTTGTCGTGGTATCGTAGTATCTAGTGTAATAATTATTAGAGCACTTGCACATATTTTATGCATAAGATTTATGGTGACAGTTTGGACATAGGGGTAGCCAATATGGCAAAATTCGTTAACTCACGATTAATGCTGGATATCATAATATTCTGGTTTAGATATCAACAAAAATGTACTGCCACCACAGAGCTACATCTATGATTTCAATAAGTAGtatccacaaaaatatattatttaacacagaaacataaaagaataaatgaaaccTTTTTAAAGATCAAATCAGCTACTTGTTATTGTGATTATTAATTAAGGAGGTCAGGGTTGGACAATTCACTAGCCTAGTACCTGGTGGATTGGGACAAGAATATCATATGTACagtcttagttttttttttgttttgttttttttactccacAGAAAAGGCAGGCAACCTTTACATTGGACTGGGAAAGCACAACAACTTCTACTTGCCTGATGGGCTAGCTActaaatttatcatttgtccacccctgaaaGTACTGACAATAttcacaatatctcagaaaattatattgtgatgtaatttataAAGATATATTGCATTGTCATATCCCCAATTCCTATTTGGGAggcatacactgcaaaaaaaaaaa
>XM_034313792.1
ATGCAAAATGTATTTAGAACGCCAAGTTGCATGACCAAGGGAAGTTGCTAGCTAATGTTGGCTAGTTAGGACTACTGTGTAACTAGCAGAACAAGTTGTGTGCTAGCTCAGCAGTGTGTAATGACTACTAAACGCCTTGAAAGTCTGACATGTCACCTTCCTTTCCTTACTGATGTGTACAGGCTGTGTTGTTAGGCATGTGCAGACTTTAGTCAGAGTTTAGGATGTTCAGACTCAGATTACAGTTTGTAGACTTGTCATACAAACATAATATGAAGTTATGTAAGTTATCTGGCACGAAGACTTGAGCCAGTCACCGGGAAGGGGAACGGGATCAGAGGGTACAGCACATACGAGATTGGATGGTGTCCACTGATCATGACCACGGACCAGGAGCCGCCTGTCAGTGCAAAACTTTTTCACCTTATCTTCCTCTCCACCTTTTGGGGCATGCAGATATGGGTCACCTTCATCTCTGGATTTGTCATGGACAGCCATCTAAACAGACACACCTACGGCTTTATTCAGAGTCGACTCTTCCCTTTCTATCTGCACATCGGCTCGGCCTGTGCGTTCTTCAACCTCACTATTTTTGCCATGTACCATCCCAGTGACCTGCTGGATGATAAAGAGGCCTTTCAGatctttgttttctttgtgtgtgtgactgtggcAGCCGTGAATGCCCAGTGGTTTGGCCAGTTAACCTCCGAAATCATGGCGGACATGCACGTGATTGAGCAGGCTTGTGGGCTGGGCCAGGACATTGGGCTCTCATCCAACCGCGAAGCCTACTCCAAACTGTGCGACAAAGACCCCAAGTACAAGCAGCTGAGCAACCGTCTGTGGCTTTACCACCTCCTCTCATCTTTCTGTAACATCTGCTGTATTGTGTGCAACGGGTACAGCCTTTATTACCTGGCAGAGAACCTTAATACGCTTTGATTTTCAGTCAGATCATTTTTGGGATTATATACCCCACAATGCAGTGTGtgccacattcacacacttaatATGTCTATATGCTGTCTAACAACTGATAATGAAGTCTTTAGAATTTCTTGCTCTTTCTTTACCTCTTTGTACTATTTGTCGTGGTATCGTAGTATCTAGTGTAATAATTATTAGAGCACTTGCACATATTTTATGCATAAGATTTATGGTGACAGTTTGGACATAGGGGTAGCCAATATGGCAAAATTCGTTAACTCACGATTAATGCTGGATATCATAATATTCTGGTTTAGATATCAACAAAAATGTACTGCCACCACAGAGCTACATCTATGATTTCAATAAGTAGtatccacaaaaatatattatttaacacagaaacataaaagaataaatgaaaccTTTTTAAAGATCAAATCAGCTACTTGTTATTGTGATTATTAATTAAGGAGGTCAGGGTTGGACAATTCACTAGCCTAGTACCTGGTGGATTGGGACAAGAATATCATATGTACagtcttagttttttttttgttttgttttttttactccacAGAAAAGGCAGGCAACCTTTACATTGGACTGGGAAAGCACAACAACTTCTACTTGCCTGATGGGCTAGCTActaaatttatcatttgtccacccctgaaaGTACTGACAATAttcacaatatctcagaaaattatattgtgatgtaatttataAAGATATATTGCATTGTCATATCCCCAATTCCTATTTGGGAggcatacactgcaaaaaaaaaaa

Function

symbol description
si:ch211-121a2.4 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM205 (transmembrane protein 205).

NR:

description
transmembrane protein 205-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944354.2 False 1529 mRNA 0.42 4 5863591 5868013
XM_034313792.1 True 1725 mRNA 0.41 4 5863795 5868013

Neighbor

gene id symbol gene type direction distance location
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding upstream 7035 5844033 ~ 5856556 (+)
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 288021 5542956 ~ 5575570 (+)
LOC113545193 NA coding upstream 342958 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 361187 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 766114 5079221 ~ 5097477 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 7175 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 36681 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 90418 5958431 ~ 5961185 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding downstream 200594 6068607 ~ 6075045 (+)
trappc8 trappc8 coding downstream 222413 6090426 ~ 6127902 (+)
LOC117599801 NA non-coding upstream 44525 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 55675 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 58003 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 59251 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 129291 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 369701 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 474250 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 554659 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 845914 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 966394 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 61898 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 884191 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1253990 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1525292 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1553662 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 267907 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1144729 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1909584 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2175373 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2620634 8488647 ~ 8534500 (+)

Expression


Co-expression Network