nme6 (nme6)


Basic Information

Item Value
gene id nme6
gene name nme6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7263926 ~ 7276146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944356.2
AGCAAAATGGCGGCGCCCATCCAGGTTTCGAGGCTCGTGCAGAAGTAGCAaaggctgaatgaaatgaaccAACCGCTAGTCAGAAATGTTTGCCAGATGATCCAAGTTAGTTATTCGAAGCCTTTGAGAGTTTTAACAGGGTTACTGGACAATATGAAGTGTTAGTCAGTTTACATTTCAGTGTTGTCAGGGTTGAACCTGTACCACAGGTGGATTAAGGTGACACGAAGTAAACAGGAAGGAGCGTTTTATTCCAAACACAGGTTATGATTTTGTCACGTGTACGATGCGCGAGGGTGCTGCAGCTCACCCTTGCGATCATAAAACCGGACGCTGTCGCTCATCCTCTAATACTGGAGGCTCTTCATCAGAAAATTCTAGAGAACAACTTCATCATTGTTAGAAGGAAAGATCTCATCTGGAGAAGAAGTGATTCAGAGAGGTTTTATGTAGAGCATAAAGGACGGTTCTTCTACCAGCGACTAGTTGAATTCATGTCAAGTGGTCCAATGAGAGCTTACATCCTAGCGAGAGAAGATGCTATTACCCACTGGCGGGAGTTGATGGGTCCCACTAAAGTGTATCGAGCACGGTACACATCACCGAGGACCATTCGAGCGCAATATGGGCTCACTGACACTAGGAACACAACACACGGCTCAGATTCGTCAGAGTCAGCCGAAAGAGAGATTGCATTCTTCTTTCCAGAATTCAGTGTTCAGCACTGGCGAGATGTGGAGGAGCCATGTTTTAGGGCAGGGCACATTGAATATGACGAGCAGAGACAAATCCATACTGCACTAAAACACATCTAAGCATTCTACTGCCTTAACCAGAAACATCTCTCATGTATATAAAGACCTTAAAAGCACTGCTCATGCTGAATATTGTGCCATTTTCTTGTATTTAACAATCAGTTGATCACAGGTTGCTGTGTTACCTTCTCCGATTTATAATTTATAGAATcttcattattttcaaatatttttgtatCATTTGTCTTTATAAATGATTGTGTTGCATCATGTGCACTTTGAATTGCTACTTTTATTATTGAATACATTATACTGGC
>XM_034313431.1
AGCAAAATGGCGGCGCCCATCCAGGTTTCGAGGCTCGTGCAGAAGTAGCAaaggctgaatgaaatgaaccAACCGCTAGTCAGAAATGTTTGCCAGATGATCCAAGTTAGTTATTCGAAGCCTTTGAGAGTTTTAACAGGGTTACTGGACAATATGAAGTGTTAGTCAGTTTACATTTCAGTGTTGTCAGGGTTGAACCTGTACCACAGGTGGATTAAGGTGACACGAAGTAAACAGGAAGGAGCGTTTTATTCCAAACACAGGTTATGATTTTGTCACGTGTACGATGCGCGAGGGTGCTGCAGCTCACCCTTGCGATCATAAAACCGGACGCTGTCGCTCATCCTCTAATACTGGAGGCTCTTCATCAGAAAATTCTAGAGAACAACTTCATCATTGTTAGAAGGAAAGATCTCATCTGGAGAAGAAGTGATTCAGAGAGGTTTTATGTAGAGCATAAAGGACGGTTCTTCTACCAGCGACTAGTTGAATTCATGTCAAGGTATGATGGTCCAATGAGAGCTTACATCCTAGCGAGAGAAGATGCTATTACCCACTGGCGGGAGTTGATGGGTCCCACTAAAGTGTATCGAGCACGGTACACATCACCGAGGACCATTCGAGCGCAATATGGGCTCACTGACACTAGGAACACAACACACGGCTCAGATTCGTCAGAGTCAGCCGAAAGAGAGATTGCATTCTTCTTTCCAGAATTCAGTGTTCAGCACTGGCGAGATGTGGAGGAGCCATGTTTTAGGGCAGGGCACATTGAATATGACGAGCAGAGACAAATCCATACTGCACTAAAACACATCTAAGCATTCTACTGCCTTAACCAGAAACATCTCTCATGTATATAAAGACCTTAAAAGCACTGCTCATGCTGAATATTGTGCCATTTTCTTGTATTTAACAATCAGTTGATCACAGGTTGCTGTGTTACCTTCTCCGATTTATAATTTATAGAATcttcattattttcaaatatttttgtatCATTTGTCTTTATAAATGATTGTGTTGCATCATGTGCACTTTGAATTGCTACTTTTATTATTGAATACATTATACTGGC
>XM_034313432.1
CAGAGCAGTATATGGTTATGGCATTTGTGATAAGTCGTGGTAGTATATAAGATAACAGGACAAGATATGACTGGATGCAAAAGAATTTGCATTCACCATGGGTTCTGGATGGCAAAAAGGACAAGGCTCTTCATCAGAAAATTCTAGAGAACAACTTCATCATTGTTAGAAGGAAAGATCTCATCTGGAGAAGAAGTGATTCAGAGAGGTTTTATGTAGAGCATAAAGGACGGTTCTTCTACCAGCGACTAGTTGAATTCATGTCAAGGTATGATGGTCCAATGAGAGCTTACATCCTAGCGAGAGAAGATGCTATTACCCACTGGCGGGAGTTGATGGGTCCCACTAAAGTGTATCGAGCACGGTACACATCACCGAGGACCATTCGAGCGCAATATGGGCTCACTGACACTAGGAACACAACACACGGCTCAGATTCGTCAGAGTCAGCCGAAAGAGAGATTGCATTCTTCTTTCCAGAATTCAGTGTTCAGCACTGGCGAGATGTGGAGGAGCCATGTTTTAGGGCAGGGCACATTGAATATGACGAGCAGAGACAAATCCATACTGCACTAAAACACATCTAAGCATTCTACTGCCTTAACCAGAAACATCTCTCATGTATATAAAGACCTTAAAAGCACTGCTCATGCTGAATATTGTGCCATTTTCTTGTATTTAACAATCAGTTGATCACAGGTTGCTGTGTTACCTTCTCCGATTTATAATTTATAGAATcttcattattttcaaatatttttgtatCATTTGTCTTTATAAATGATTGTGTTGCATCATGTGCACTTTGAATTGCTACTTTTATTATTGAATACATTATACTGGC

Function

symbol description
nme6 Predicted to enable nucleoside diphosphate kinase activity. Predicted to be involved in negative regulation of cell growth and negative regulation of mitotic nuclear division. Predicted to act upstream of or within nucleotide metabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including eye; female organism; gill; gonad; and male organism. Orthologous to human NME6 (NME/NM23 nucleoside diphosphate kinase 6).

NR:

description
nucleoside diphosphate kinase 6-like

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG:

id description
K00940 ndk, NME; nucleoside-diphosphate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944356.2 False 1072 mRNA 0.42 5 7267406 7276146
XM_034313431.1 True 1078 mRNA 0.42 5 7267406 7276146
XM_034313432.1 False 844 mRNA 0.40 5 7263926 7276146

Neighbor

gene id symbol gene type direction distance location
atraid atraid coding upstream 14104 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 44270 7208687 ~ 7219656 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 116792 7118691 ~ 7147134 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 157910 7096141 ~ 7106016 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 206299 7053958 ~ 7057627 (+)
si:ch211-142k18.1 LOC108257612 coding downstream 62933 7339079 ~ 7344915 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 72009 7348155 ~ 7356914 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 202136 7478282 ~ 7502438 (+)
trnac-gca_25 NA coding downstream 313222 7589368 ~ 7589439 (+)
six4b LOC108258176,LOC108434989 coding downstream 347075 7623221 ~ 7629922 (+)
G291300 NA non-coding upstream 1815 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 36699 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 205343 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 281122 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 324307 6939191 ~ 6939619 (+)
G291380 NA non-coding downstream 128282 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 213162 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 245778 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 334341 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 388983 7665129 ~ 7666009 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 244240 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1103886 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1462233 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2284526 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2654325 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 501451 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 767240 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1212501 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1717367 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1797882 9074028 ~ 9179173 (+)

Expression


Co-expression Network