dhcr24 (dhcr24,LOC107581458,LOC107687183,LOC107566150)


Basic Information

Item Value
gene id dhcr24
gene name dhcr24,LOC107581458,LOC107687183,LOC107566150
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5844033 ~ 5856556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944357.2
TGCTTTATTTATAGTGCACTACTTATGGTACAGAACTCATTATTTGACGTCGTATCTAGTGCTCTAGTGTAGGGAATAGGTTGTGGCTTGGTATTCAGCCTTACACAAGGTGTAAAAtcaggcaaataaataaatgtgacaaaATTCGCGGTTGCACGTTTTAACCCAAGTGTGAAGGCAGTCCTAAAAAGTGCAGGATCAGATGGATCCAATGCTGTATCTCGGTGTTTTGGTTATTTTGTTGCTTCTGTGGATCAGGATAAAAGGCTTAGATTATGTTCTAATTCACCAGCGATGGATATTTGTTTGCCTTTTCCTTCTGCCCTTGTCTGTGGTGTTTGATGCCTATTATTATGTGCGAGCTTGGATCATCTTTAAGATGTGCTCAGCGCCCAAGCTGCACAATCAGCGGGTCCGGGACATCCAGAGACAGGTTCGTGAGTGGAAGAAGGAGGGAGGAAAGGCATATATGTGCACTGGACGTCCTGGCTGGCTGACCGTGTCTCTGAGGGTGGGGAAATATAAGAAGACTCACAAGAATATAAAAATCAATATGATGGATATTCTAGAGGTGGACACAGAAAGACAGGTGGTACGTGTGGAGCCCTTGGTAAATATGGGTCAAGTGACAGCCTTATTGAATTCCATCGGCTGGACGCTGCCTGTATTACCTGAGCTTGATGATCTCACAGTAGggGGTTTGGTAATGGGCACAGGGATTGAGTCCTCGTCTCATATTTATGGCCTGTTCCAACACATCTGTGTGGCTTTTGAGCTGGTACTGGCAGATGGCAGTCTGGTTCGCTGCACTGAGAAAGAGAACTCGGAGCTGTTCTATTCGGTCCCGTGGTCCTGCGGAACCCTGGGCTTCTTGGTGGCAGCTGAGATTCGCATTATTCCAGCTCGGAAGTGGGTGAGGCTGTGCTACAAGCCCGTGCGGGGTTTGGATGCCATCTGTAAGGTGTTTGCAGAGGAGTCAGCTAACAAAGAGAACCATTTTGTGGAAGGGCTGCAGTATTCGCTCAACGAGGCTGTTATTATGACTGGAGTTATGACTGACCACGCCGAGCCTGACAAGATCAATCGCATTGGTCACTTCTACAAGCCCTGGTTCTTTAAGCACGTGGAGAAGTACCTGAAGGAGGATGGAATTGGTGTGGAGTACATCCCACTCAGACACtactaccacagacacacacgaaGCATCTTCTGGGAGCTACAGGACATCATTCCTTTTGGGAATAACCCGCTGTTCAGGTATTTGTTTGGCTGGATGGTTCCTCCTAAGATCTCCCTGCTGAAGCTGACTCAGGGCGAGACCATCCGCCGGCTTTACGAGCAGCATCACGTGGTTCAGGACATGCTGGTGCCCATGAAACACATGCACACGGCCATCTCACACTTCCACAAGAACATTCATgtgtatcCCTTATGGCTGTGCCCATTCATATTGCCCAGTCGGCCAGGCATGGTGCATCCTAAAGGAGATGAAGATGAGCTGTATGTGGATATTGGAGCATACGGGGAACCCCAAGTCAAACACTTTGAGGCTCGGGCCTCAACACGCCAGCTTGAGAAGTTTGTCCGAGATGTACACggTTTCCAGATGCTTTATGCTGATGTGTACATGGACCAGCAAGAATTCTGGGAAATGTTTGATGGTGAGCTGTATCATAAGCTAAGGGAGGAGCTGGACTGTGAGCAGGCATTTCCTGAAGTGTACAACAAAATCTGCAAAGCTGCAAGACACTAAATTCAGTCCTGATTGAAAtacaggaaaaagagaaaatggaattaattaaaattataagcTCGTGAAAAGTCAACCAGCTGTAGACAGTATTACCAGCTATCTTTTTTAATTGGATTTTTAAGACTAGTCATATACACTTGAGCcttcttacatttaaatattttttggcaagcaatataaataaagggaatatcagtaaaatatattttctacaCTGAATATTGTCCTTTTTTACGTGCATCTAAATGATATATTTTGTCAGTGAAAGTATAAAAtgaaagtatattttaataCCTATTTCCCCAGTGTCATTCTCATAGTAAATCTGCCTTCAAGCTCTAGGGCAAATTGCTGTCCAAGTTTGCCTTGTATATCAACGCACAACTTTATAACTCGTGACAGCAGGTATTGCTTTTCCATAAGTGCCACCTGTAAAACCTccttaatgtatttttttctcttacaaatgaacaaaacacaaaatacagactGCTCTTATGTCAATGAAGTGTGTCtttaaattattctttttttcacttttgccATCATTGTTGGTTTTAGATCGTGACCCTCTTACAGTATTGTGTTTGCTGCTTAGATCACACAAGATTTTGGCATGTGAACATTAGCAATCTTATTGTTCCAATCTCAAGACTGGTTTCTGGGTTCATTCTCAGTAGCCCAgataattttcattatttaatccTGATGTATTTCTTTTATAAGGGGTTTGggatgtgtgtgctgtatatGGTGCAATAAAATTCAAATCTGTCAATA
>XM_026944360.2
GTGCTTTATTTATAGTGCACTACTTATGGTACAGAACTCATTATTTGACGTCGTATCTAGTGCTCTAGTGTAGGGAATAGGTTGTGGCTTGGTATTCAGCCTTACACAAGGTGTAAAAtcaggcaaataaataaatgtgacaaaATTCGCGGTTGCACGTTTTAACCCAAGTGTGAAGGCAGTCCTAAAAAGTGCAGGATCAGttgtttgtttCTACTCCAGATGGATCCAATGCTGTATCTCGGTGTTTTGGTTATTTTGTTGCTTCTGTGGATCAGGATAAAAGGCTTAGATTATGTTCTAATTCACCAGCGATGGATATTTGTTTGCCTTTTCCTTCTGCCCTTGTCTGTGGTGTTTGATGCCTATTATTATGTGCGAGCTTGGATCATCTTTAAGATGTGCTCAGCGCCCAAGCTGCACAATCAGCGGGTCCGGGACATCCAGAGACAGGTTCGTGAGTGGAAGAAGGAGGGAGGAAAGGCATATATGTGCACTGGACGTCCTGGCTGGCTGACCGTGTCTCTGAGGGTGGGGAAATATAAGAAGACTCACAAGAATATAAAAATCAATATGATGGATATTCTAGAGGTGGACACAGAAAGACAGGTGGTACGTGTGGAGCCCTTGGTAAATATGGGTCAAGTGACAGCCTTATTGAATTCCATCGGCTGGACGCTGCCTGTATTACCTGAGCTTGATGATCTCACAGTAGggGGTTTGGTAATGGGCACAGGGATTGAGTCCTCGTCTCATATTTATGGCCTGTTCCAACACATCTGTGTGGCTTTTGAGCTGGTACTGGCAGATGGCAGTCTGGTTCGCTGCACTGAGAAAGAGAACTCGGAGCTGTTCTATTCGGTCCCGTGGTCCTGCGGAACCCTGGGCTTCTTGGTGGCAGCTGAGATTCGCATTATTCCAGCTCGGAAGTGGGTGAGGCTGTGCTACAAGCCCGTGCGGGGTTTGGATGCCATCTGTAAGGTGTTTGCAGAGGAGTCAGCTAACAAAGAGAACCATTTTGTGGAAGGGCTGCAGTATTCGCTCAACGAGGCTGTTATTATGACTGGAGTTATGACTGACCACGCCGAGCCTGACAAGATCAATCGCATTGGTCACTTCTACAAGCCCTGGTTCTTTAAGCACGTGGAGAAGTACCTGAAGGAGGATGGAATTGGTGTGGAGTACATCCCACTCAGACACtactaccacagacacacacgaaGCATCTTCTGGGAGCTACAGGACATCATTCCTTTTGGGAATAACCCGCTGTTCAGGTATTTGTTTGGCTGGATGGTTCCTCCTAAGATCTCCCTGCTGAAGCTGACTCAGGGCGAGACCATCCGCCGGCTTTACGAGCAGCATCACGTGGTTCAGGACATGCTGGTGCCCATGAAACACATGCACACGGCCATCTCACACTTCCACAAGAACATTCATgtgtatcCCTTATGGCTGTGCCCATTCATATTGCCCAGTCGGCCAGGCATGGTGCATCCTAAAGGAGATGAAGATGAGCTGTATGTGGATATTGGAGCATACGGGGAACCCCAAGTCAAACACTTTGAGGCTCGGGCCTCAACACGCCAGCTTGAGAAGTTTGTCCGAGATGTACACggTTTCCAGATGCTTTATGCTGATGTGTACATGGACCAGCAAGAATTCTGGGAAATGTTTGATGGTGAGCTGTATCATAAGCTAAGGGAGGAGCTGGACTGTGAGCAGGCATTTCCTGAAGTGTACAACAAAATCTGCAAAGCTGCAAGACACTAAATTCAGTCCTGATTGAAAtacaggaaaaagagaaaatggaattaattaaaattataagcTCGTGAAAAGTCAACCAGCTGTAGACAGTATTACCAGCTATCTTTTTTAATTGGATTTTTAAGACTAGTCATATACACTTGAGCcttcttacatttaaatattttttggcaagcaatataaataaagggaatatcagtaaaatatattttctacaCTGAATATTGTCCTTTTTTACGTGCATCTAAATGATATATTTTGTCAGTGAAAGTATAAAAtgaaagtatattttaataCCTATTTCCCCAGTGTCATTCTCATAGTAAATCTGCCTTCAAGCTCTAGGGCAAATTGCTGTCCAAGTTTGCCTTGTATATCAACGCACAACTTTATAACTCGTGACAGCAGGTATTGCTTTTCCATAAGTGCCACCTGTAAAACCTccttaatgtatttttttctcttacaaatgaacaaaacacaaaatacagactGCTCTTATGTCAATGAAGTGTGTCtttaaattattctttttttcacttttgccATCATTGTTGGTTTTAGATCGTGACCCTCTTACAGTATTGTGTTTGCTGCTTAGATCACACAAGATTTTGGCATGTGAACATTAGCAATCTTATTGTTCCAATCTCAAGACTGGTTTCTGGGTTCATTCTCAGTAGCCCAgataattttcattatttaatccTGATGTATTTCTTTTATAAGGGGTTTGggatgtgtgtgctgtatatGGTGCAATAAAATTCAAATCTGTCAATA
>XM_034313451.1
GTGCTTTATTTATAGTGCACTACTTATGGTACAGAACTCATTATTTGACGTCGTATCTAGTGCTCTAGTGTAGGGAATAGGTTGTGGCTTGGTATTCAGCCTTACACAAGGTGTAAAAtcaggcaaataaataaatgtgacaaaATTCGCGGTTGCACGTTTTAACCCAAGTGTGAAGGCAGTCCTAAAAAGTGCAGGATCAGGTAAGATGGATCCAATGCTGTATCTCGGTGTTTTGGTTATTTTGTTGCTTCTGTGGATCAGGATAAAAGGCTTAGATTATGTTCTAATTCACCAGCGATGGATATTTGTTTGCCTTTTCCTTCTGCCCTTGTCTGTGGTGTTTGATGCCTATTATTATGTGCGAGCTTGGATCATCTTTAAGATGTGCTCAGCGCCCAAGCTGCACAATCAGCGGGTCCGGGACATCCAGAGACAGGTTCGTGAGTGGAAGAAGGAGGGAGGAAAGGCATATATGTGCACTGGACGTCCTGGCTGGCTGACCGTGTCTCTGAGGGTGGGGAAATATAAGAAGACTCACAAGAATATAAAAATCAATATGATGGATATTCTAGAGGTGGACACAGAAAGACAGGTGGTACGTGTGGAGCCCTTGGTAAATATGGGTCAAGTGACAGCCTTATTGAATTCCATCGGCTGGACGCTGCCTGTATTACCTGAGCTTGATGATCTCACAGTAGggGGTTTGGTAATGGGCACAGGGATTGAGTCCTCGTCTCATATTTATGGCCTGTTCCAACACATCTGTGTGGCTTTTGAGCTGGTACTGGCAGATGGCAGTCTGGTTCGCTGCACTGAGAAAGAGAACTCGGAGCTGTTCTATTCGGTCCCGTGGTCCTGCGGAACCCTGGGCTTCTTGGTGGCAGCTGAGATTCGCATTATTCCAGCTCGGAAGTGGGTGAGGCTGTGCTACAAGCCCGTGCGGGGTTTGGATGCCATCTGTAAGGTGTTTGCAGAGGAGTCAGCTAACAAAGAGAACCATTTTGTGGAAGGGCTGCAGTATTCGCTCAACGAGGCTGTTATTATGACTGGAGTTATGACTGACCACGCCGAGCCTGACAAGATCAATCGCATTGGTCACTTCTACAAGCCCTGGTTCTTTAAGCACGTGGAGAAGTACCTGAAGGAGGATGGAATTGGTGTGGAGTACATCCCACTCAGACACtactaccacagacacacacgaaGCATCTTCTGGGAGCTACAGGACATCATTCCTTTTGGGAATAACCCGCTGTTCAGGTATTTGTTTGGCTGGATGGTTCCTCCTAAGATCTCCCTGCTGAAGCTGACTCAGGGCGAGACCATCCGCCGGCTTTACGAGCAGCATCACGTGGTTCAGGACATGCTGGTGCCCATGAAACACATGCACACGGCCATCTCACACTTCCACAAGAACATTCATgtgtatcCCTTATGGCTGTGCCCATTCATATTGCCCAGTCGGCCAGGCATGGTGCATCCTAAAGGAGATGAAGATGAGCTGTATGTGGATATTGGAGCATACGGGGAACCCCAAGTCAAACACTTTGAGGCTCGGGCCTCAACACGCCAGCTTGAGAAGTTTGTCCGAGATGTACACggTTTCCAGATGCTTTATGCTGATGTGTACATGGACCAGCAAGAATTCTGGGAAATGTTTGATGGTGAGCTGTATCATAAGCTAAGGGAGGAGCTGGACTGTGAGCAGGCATTTCCTGAAGTGTACAACAAAATCTGCAAAGCTGCAAGACACTAAATTCAGTCCTGATTGAAAtacaggaaaaagagaaaatggaattaattaaaattataagcTCGTGAAAAGTCAACCAGCTGTAGACAGTATTACCAGCTATCTTTTTTAATTGGATTTTTAAGACTAGTCATATACACTTGAGCcttcttacatttaaatattttttggcaagcaatataaataaagggaatatcagtaaaatatattttctacaCTGAATATTGTCCTTTTTTACGTGCATCTAAATGATATATTTTGTCAGTGAAAGTATAAAAtgaaagtatattttaataCCTATTTCCCCAGTGTCATTCTCATAGTAAATCTGCCTTCAAGCTCTAGGGCAAATTGCTGTCCAAGTTTGCCTTGTATATCAACGCACAACTTTATAACTCGTGACAGCAGGTATTGCTTTTCCATAAGTGCCACCTGTAAAACCTccttaatgtatttttttctcttacaaatgaacaaaacacaaaatacagactGCTCTTATGTCAATGAAGTGTGTCtttaaattattctttttttcacttttgccATCATTGTTGGTTTTAGATCGTGACCCTCTTACAGTATTGTGTTTGCTGCTTAGATCACACAAGATTTTGGCATGTGAACATTAGCAATCTTATTGTTCCAATCTCAAGACTGGTTTCTGGGTTCATTCTCAGTAGCCCAgataattttcattatttaatccTGATGTATTTCTTTTATAAGGGGTTTGggatgtgtgtgctgtatatGGTGCAATAAAATTCAAATCTGTCAATA

Function

symbol description
dhcr24 Predicted to enable delta24(24-1) sterol reductase activity. Predicted to be involved in steroid metabolic process. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and membrane. Is expressed in cranial ganglion; lens; solid lens vesicle; telencephalon; and yolk syncytial layer. Human ortholog(s) of this gene implicated in lipid metabolism disorder. Orthologous to human DHCR24 (24-dehydrocholesterol reductase).

NR:

description
delta(24)-sterol reductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008762 UDP-N-acetylmuramate dehydrogenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K09828 DHCR24, DWF1; Delta24-sterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944357.2 False 2533 mRNA 0.43 10 5844034 5856556
XM_026944360.2 True 2553 mRNA 0.43 10 5844033 5856556
XM_034313451.1 False 2539 mRNA 0.43 10 5844033 5856556

Neighbor

gene id symbol gene type direction distance location
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 268463 5542956 ~ 5575570 (+)
LOC113545193 NA coding upstream 323400 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 341629 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 746556 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 766115 5066310 ~ 5077918 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 7035 5863591 ~ 5868013 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 18632 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 48138 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 101875 5958431 ~ 5961185 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding downstream 212051 6068607 ~ 6075045 (+)
LOC117599801 NA non-coding upstream 24967 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 36117 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 38445 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 39693 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 109733 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 381158 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 485707 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 566116 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 857371 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 977851 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 42340 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 864633 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1234432 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1505734 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1534104 4248330 ~ 4309929 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 279364 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1156186 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1921041 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2186830 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2632091 8488647 ~ 8534500 (+)

Expression


Co-expression Network