bmp2b (LOC108258023)


Basic Information

Item Value
gene id bmp2b
gene name LOC108258023
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9037111 ~ 9041907 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944361.2
GACATCACCCGAAAACAAAAAGCCTAGAGCCGTGAGCGGCGCGCGCTGCAATCTACGCGCCCACGGCAGCGCGCGCTAACACGCGGAGATGACGTTCCCAAGTGAATGCGTGCACAACCCGCGACTTCACCACAGCTTATACACACTTCTCCTGGCTAACAGGCTAGAAACATGTCCGAACCAGAAGTCGTTTCTTCTCACCGCTCACGTTTGCGCAGACGCGTTCGTTTGACCTTATAATCACGTTCTACTCGGCGCGAGCGTGCTCGGGTTGCTAGTTCGGCGCGTGTCGACACGGCGAGTGTGAGCGCGAGGACGCGAGCTAAAGAACTCAGTAGGGGCGAGCGGCTGCAGCGCGCTCAtatatcagattaaaaaaaaaagtcgctgtGGATTAACGTGGATTATTGTGGAATTTCAAGGACAGTGCTGCAGGGAAAGCGAGTGAGCACAGCACATCACCGACTGTGTGGTAATTCCTTCCCAAGTTAGGGGTAGTGTTTAATGGGTTGGGGGGGAGTTACATCTTCCTGGGACATCAAGATAATTGAAGGTGTTTTGGACATTCAGGTGTTTGTCGTAGGCGTCTACCACCTGTAGCTCAaagtctctctcgctctctctctctctctctctctctcgctctctttttaTTCAGCTGTAAAACTGGCACGCGCGCGCAGAGCTGCAAACCCTAAAACCGCACCGAGTTTCTTTTTAGCCCAGAGttccccgtctctctctctctctctctctctctctctctgacttttcCTTTTATGCCTGGCCTGATGTGAAGCTCTGAAGGCAGAGCGTGTAGTGTAGACATGTGTTGTTCAGTGTACACCCCCCACCCAGACCGTGCCCCTCTTATCTCAGCTTAATTGCAGCCTCGATGTCTGCTGTCTTCGCGTCTCCTTTCTTTCAGTATCTTTGATTCAGCGTCTCATCTCATCTCCACTCGCTGTTTGGTTTGACATCCTCTTTCAGGCTCCCTTACGTGCTCGAGCTCGGTGAGGAGAGGATATTATTTATAGCCCGCGGGCGGGGATAATATccctaaactttttttttttttaattgttgttcCTCGGCTTAAAGTGCGCCATCTACCTTCAGAACGCCTTCAGATCCGGAGATCACCGGCTTGtggcgagagagagggagagagagagagagagagagagagagagagagagagcgggctGGAGGCTGGGCGCTCGCGCGGATCGGGGGTCCATGCGCGGTGTCGCCGCCTGACGCGAGCTCGGCCCGGGAGCTCTAAGCCCTCCTCCTCTGTGCCCTCTCTCTGAGAATGGTAGCCGTGCTCCGCTCGGTCGTGGCGCTCGTGCTGCTGCTCGGTCAGGTGTGGCTGGGCGCCGCCGCCGGTCTCATTCCCGACGTGGAGCGGCGAAGGCACGCGCCCGAGCACTCCGAGCGCTTTCTTCGCGACTTCGAGCTCCGACTGCTGAACATGTTCGGCTTAAAGCGGAAACCCACGCCGAGCAAGGGAGCCGTGGTACCTCAGTACATGCTGGACCTCTACTACATGCACTCGGAGAACGGAGACCAGAAAAGCGTCCGGCGGCCCAGGAGCGTCATGGGGAGGCACGCGGAGCGCGCGGCCAGCAGGGCCAACACCATCCGGAGTTTCCATCACGAAGaggCTTTAGAGGCCCTGTCCAGCCTGAAAGGAAGGACCACACAGCAGCTGTTTTTTAACCTCACTTCAGTTCCAGCAGAGGAGCTGATCACGGCTGCAGAGCTACGCATCTTCAGAGACCAGGTGCTCAGTGACTTTACTCAGAGCAACACAAGTCGCGCTGGAGCCTTTCAGCGCATTAACATTTTTGAGGTGTTTAGGCCAGCTCATTCCCCCTCACAGGAGCCTCTCACCAGACTTTTGGACACTCGTCTGGTACAGGACTCACACTCACGCTGGGAAAGCTTTGATGTAAGCTCAGCTGCAGCACGCTGGGCCACACAGCCACACCACAACCATGGCCTCATGGTGGAGATTCTGCACCCAGGCGAGGCCAGTGATGGTGAGGAGGCCGAGGCAAGCAGGAGTAGACATGTCAGGGTGAGCCGGTCCCTACATGCCGACAGTGAATCCTGGACTCAGGCTCGGCCACTGCTGGTCACTTACAGCCACGATGGCCAGGGCACTGCAACGCTCCACAGAGAAAAGCGGCAGGTGCGGCGTCCACCCAAACAGCGGCGCAAACAGCAGCGAGCCAACTGCCGCCGGCACCCACTCTATGTAGACTTTAGTGATGTGGGCTGGAACGTGTGGATTGTGGCACCACCGGGCTACCACGCCTTTTACTGCCAAGGCGAGTGCCCGTTCCCACTGTCAGACCACCTGAACTCCACCAACCATGCCATTGTGCAGACCCTTGTGAATTCTGTGAACTCTAATGTGCCACGGGCATGTTGCGTACCCACAGAGCTCAGTCCCATCTCTCTGCTCTACCTGGATGAGTATGAGAAGGTCGTCTTAAAGAACTATCAAGACATGGTGGTGGAGGGCTGCGGCTGCCGATGAGAACTAAACTCATGAAACTTAtgaagactttttttatttatatgaaagaACTTTCAAAAAGAgttattttggaaaaaagaaatattttatacatata
>XM_034313446.1
GACATCACCCGAAAACAAAAAGCCTAGAGCCGTGAGCGGCGCGCGCTGCAATCTACGCGCCCACGGCAGCGCGCGCTAACACGCGGAGATGACGTTCCCAAGTGAATGCGTGCACAACCCGCGACTTCACCACAGCTTATACACACTTCTCCTGGCTAACAGGCTAGAAACATGTCCGAACCAGAAGTCGTTTCTTCTCACCGCTCACGTTTGCGCAGACGCGTTCGTTTGACCTTATAATCACGTTCTACTCGGCGCGAGCGTGCTCGGGTTGCTAGTTCGGCGCGTGTCGACACGGCGAGTGTGAGCGCGAGGACGCGAGCTAAAGAACTCAGTAGGGGCGAGCGGCTGCAGCGCGCTCAtatatcagattaaaaaaaaaagtcgctgtGGATTAACGTGGATTATTGTGGAATTTCAAGGACAGTGCTGCAGGGAAAGCGAGTGAGCACAGCACATCACCGACTGTGTGGTAATTCCTTCCCAAGTTAGGGGTAGTGTTTAATGGGTTGGGGGGGAGTTACATCTTCCTGGGACATCAAGATAATTGAAGGTGTTTTGGACATTCAGGTGTTTGTCGTAGGCGTCTACCACCTGTAGCTCAaagtctctctcgctctctctctctctctctctctctcgctctctttttaTTCAGCTGTAAAACTGGCACGCGCGCGCAGAGCTGCAAACCCTAAAACCGCACCGAGTTTCTTTTTAGCCCAGAGttccccgtctctctctctctctctctctctctctctctgacttttcCTTTTATGCCTGGCCTGATGTGAAGCTCTGAAGGCAGAGCGTGTAGTGTAGACATGTGTTGTTCAGTGTACACCCCCCACCCAGACCGTGCCCCTCTTATCTCAGCTTAATTGCAGCCTCGATGTCTGCTGTCTTCGCGTCTCCTTTCTTTCAGTATCTTTGATTCAGCGTCTCATCTCATCTCCACTCGCTGTTTGGTTTGACATCCTCTTTCAGGCTCCCTTACGTGCTCGAGCTCGTGCGCCATCTACCTTCAGAACGCCTTCAGATCCGGAGATCACCGGCTTGtggcgagagagagggagagagagagagagagagagagagagagagagagagcgggctGGAGGCTGGGCGCTCGCGCGGATCGGGGGTCCATGCGCGGTGTCGCCGCCTGACGCGAGCTCGGCCCGGGAGCTCTAAGCCCTCCTCCTCTGTGCCCTCTCTCTGAGAATGGTAGCCGTGCTCCGCTCGGTCGTGGCGCTCGTGCTGCTGCTCGGTCAGGTGTGGCTGGGCGCCGCCGCCGGTCTCATTCCCGACGTGGAGCGGCGAAGGCACGCGCCCGAGCACTCCGAGCGCTTTCTTCGCGACTTCGAGCTCCGACTGCTGAACATGTTCGGCTTAAAGCGGAAACCCACGCCGAGCAAGGGAGCCGTGGTACCTCAGTACATGCTGGACCTCTACTACATGCACTCGGAGAACGGAGACCAGAAAAGCGTCCGGCGGCCCAGGAGCGTCATGGGGAGGCACGCGGAGCGCGCGGCCAGCAGGGCCAACACCATCCGGAGTTTCCATCACGAAGaggCTTTAGAGGCCCTGTCCAGCCTGAAAGGAAGGACCACACAGCAGCTGTTTTTTAACCTCACTTCAGTTCCAGCAGAGGAGCTGATCACGGCTGCAGAGCTACGCATCTTCAGAGACCAGGTGCTCAGTGACTTTACTCAGAGCAACACAAGTCGCGCTGGAGCCTTTCAGCGCATTAACATTTTTGAGGTGTTTAGGCCAGCTCATTCCCCCTCACAGGAGCCTCTCACCAGACTTTTGGACACTCGTCTGGTACAGGACTCACACTCACGCTGGGAAAGCTTTGATGTAAGCTCAGCTGCAGCACGCTGGGCCACACAGCCACACCACAACCATGGCCTCATGGTGGAGATTCTGCACCCAGGCGAGGCCAGTGATGGTGAGGAGGCCGAGGCAAGCAGGAGTAGACATGTCAGGGTGAGCCGGTCCCTACATGCCGACAGTGAATCCTGGACTCAGGCTCGGCCACTGCTGGTCACTTACAGCCACGATGGCCAGGGCACTGCAACGCTCCACAGAGAAAAGCGGCAGGTGCGGCGTCCACCCAAACAGCGGCGCAAACAGCAGCGAGCCAACTGCCGCCGGCACCCACTCTATGTAGACTTTAGTGATGTGGGCTGGAACGTGTGGATTGTGGCACCACCGGGCTACCACGCCTTTTACTGCCAAGGCGAGTGCCCGTTCCCACTGTCAGACCACCTGAACTCCACCAACCATGCCATTGTGCAGACCCTTGTGAATTCTGTGAACTCTAATGTGCCACGGGCATGTTGCGTACCCACAGAGCTCAGTCCCATCTCTCTGCTCTACCTGGATGAGTATGAGAAGGTCGTCTTAAAGAACTATCAAGACATGGTGGTGGAGGGCTGCGGCTGCCGATGAGAACTAAACTCATGAAACTTAtgaagactttttttatttatatgaaagaACTTTCAAAAAGAgttattttggaaaaaagaaatattttatacatata
>XM_034313447.1
GACATCACCCGAAAACAAAAAGCCTAGAGCCGTGAGCGGCGCGCGCTGCAATCTACGCGCCCACGGCAGCGCGCGCTAACACGCGGAGATGACGTTCCCAAGTGAATGCGTGCACAACCCGCGACTTCACCACAGCTTATACACACTTCTCCTGGCTAACAGGCTAGAAACATGTCCGAACCAGAAGTCGTTTCTTCTCACCGCTCACGTTTGCGCAGACGCGTTCGTTTGACCTTATAATCACGTTCTACTCGGCGCGAGCGTGCTCGGGTTGCTAGTTCGGCGCGTGTCGACACGGCGAGTGTGAGCGCGAGGACGCGAGCTAAAGAACTCAGTAGGGGCGAGCGGCTGCAGCGCGCTCAtatatcagattaaaaaaaaaagtcgctgtGGATTAACGTGGATTATTGTGGAATTTCAAGGACAGTGCTGCAGGGAAAGCGAGTGAGCACAGCACATCACCGACTGTGTGGTAATTCCTTCCCAAGTTAGGGGTAGTGTTTAATGGGTTGGGGGGGAGTTACATCTTCCTGGGACATCAAGATAATTGAAGGTGTTTTGGACATTCAGGTGTTTGTCGTAGGCGTCTACCACCTGTAGCTCAaagtctctctcgctctctctctctctctctctctctcgctctctttttaTTCAGCTGTAAAACTGGCACGCGCGCGCAGAGCTGCAAACCCTAAAACCGCACCGAGTTTCTTTTTAGCCCAGAGttccccgtctctctctctctctctctctctctctctctgacttttcCTTTTATGCCTGGCCTGATGTGAAGCTCTGAAGGCAGAGCGTGTAGTGTAGACATGTGTTGTTCAGTGTACACCCCCCACCCAGACCGTGCCCCTCTTATCTCAGCTTAATTGCAGCCTCGATGTCTGCTGTCTTCGCGTCTCCTTTCTTTCAGTATCTTTGATTCAGCGTCTCATCTCATCTCCACTCGCTGTTTGGTTTGACATCCTCTTTCAGGCTCCCTTACGTGCTCGAGCTCGAACGCCTTCAGATCCGGAGATCACCGGCTTGtggcgagagagagggagagagagagagagagagagagagagagagagagagcgggctGGAGGCTGGGCGCTCGCGCGGATCGGGGGTCCATGCGCGGTGTCGCCGCCTGACGCGAGCTCGGCCCGGGAGCTCTAAGCCCTCCTCCTCTGTGCCCTCTCTCTGAGAATGGTAGCCGTGCTCCGCTCGGTCGTGGCGCTCGTGCTGCTGCTCGGTCAGGTGTGGCTGGGCGCCGCCGCCGGTCTCATTCCCGACGTGGAGCGGCGAAGGCACGCGCCCGAGCACTCCGAGCGCTTTCTTCGCGACTTCGAGCTCCGACTGCTGAACATGTTCGGCTTAAAGCGGAAACCCACGCCGAGCAAGGGAGCCGTGGTACCTCAGTACATGCTGGACCTCTACTACATGCACTCGGAGAACGGAGACCAGAAAAGCGTCCGGCGGCCCAGGAGCGTCATGGGGAGGCACGCGGAGCGCGCGGCCAGCAGGGCCAACACCATCCGGAGTTTCCATCACGAAGaggCTTTAGAGGCCCTGTCCAGCCTGAAAGGAAGGACCACACAGCAGCTGTTTTTTAACCTCACTTCAGTTCCAGCAGAGGAGCTGATCACGGCTGCAGAGCTACGCATCTTCAGAGACCAGGTGCTCAGTGACTTTACTCAGAGCAACACAAGTCGCGCTGGAGCCTTTCAGCGCATTAACATTTTTGAGGTGTTTAGGCCAGCTCATTCCCCCTCACAGGAGCCTCTCACCAGACTTTTGGACACTCGTCTGGTACAGGACTCACACTCACGCTGGGAAAGCTTTGATGTAAGCTCAGCTGCAGCACGCTGGGCCACACAGCCACACCACAACCATGGCCTCATGGTGGAGATTCTGCACCCAGGCGAGGCCAGTGATGGTGAGGAGGCCGAGGCAAGCAGGAGTAGACATGTCAGGGTGAGCCGGTCCCTACATGCCGACAGTGAATCCTGGACTCAGGCTCGGCCACTGCTGGTCACTTACAGCCACGATGGCCAGGGCACTGCAACGCTCCACAGAGAAAAGCGGCAGGTGCGGCGTCCACCCAAACAGCGGCGCAAACAGCAGCGAGCCAACTGCCGCCGGCACCCACTCTATGTAGACTTTAGTGATGTGGGCTGGAACGTGTGGATTGTGGCACCACCGGGCTACCACGCCTTTTACTGCCAAGGCGAGTGCCCGTTCCCACTGTCAGACCACCTGAACTCCACCAACCATGCCATTGTGCAGACCCTTGTGAATTCTGTGAACTCTAATGTGCCACGGGCATGTTGCGTACCCACAGAGCTCAGTCCCATCTCTCTGCTCTACCTGGATGAGTATGAGAAGGTCGTCTTAAAGAACTATCAAGACATGGTGGTGGAGGGCTGCGGCTGCCGATGAGAACTAAACTCATGAAACTTAtgaagactttttttatttatatgaaagaACTTTCAAAAAGAgttattttggaaaaaagaaatattttatacatata

Function

NR:

description
PREDICTED: bone morphogenetic protein 2

GO:

id name namespace
GO:0001710 mesodermal cell fate commitment biological_process
GO:0060876 semicircular canal formation biological_process
GO:0055015 ventricular cardiac muscle cell development biological_process
GO:0045168 cell-cell signaling involved in cell fate commitment biological_process
GO:0048264 determination of ventral identity biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0040007 growth biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0060030 dorsal convergence biological_process
GO:0030903 notochord development biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944361.2 True 2645 mRNA 0.55 2 9037111 9041907
XM_034313446.1 False 2557 mRNA 0.55 3 9037111 9041907
XM_034313447.1 False 2539 mRNA 0.55 3 9037111 9041907

Neighbor

gene id symbol gene type direction distance location
chgb LOC108258019 coding upstream 46582 8987232 ~ 8990529 (+)
gzf1 gzf1 coding upstream 90110 8940392 ~ 8947001 (+)
trnak-uuu_18 NA coding upstream 145371 8891668 ~ 8891740 (+)
atad2b atad2b,LOC107603081 coding upstream 332126 8636450 ~ 8704985 (+)
wdcp wdcp coding upstream 431128 8600411 ~ 8605983 (+)
LOC113545235 plcb4,LOC108258041 coding downstream 141525 9183432 ~ 9255249 (+)
lamp5 lamp5,LOC107704368 coding downstream 216487 9258394 ~ 9264851 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding downstream 294885 9336792 ~ 9338360 (+)
LOC113545203 NA coding downstream 342974 9384881 ~ 9385795 (+)
LOC113545286 LOC108258122 coding downstream 347839 9389746 ~ 9412235 (+)
G292102 NA non-coding upstream 331867 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 451209 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 453634 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 526335 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 563383 8470947 ~ 8473728 (+)
G292654 NA non-coding downstream 366585 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 372644 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 512530 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 545793 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 570081 9611988 ~ 9612612 (+)
G292216 trmt6 other upstream 40115 8993513 ~ 8996996 (+)
LOC113545369 NA other upstream 502611 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 962667 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1255103 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 2017425 7012742 ~ 7019686 (+)
LOC113545247 plcb1,LOC108258091 other downstream 32121 9074028 ~ 9179173 (+)
G293016 ileu other downstream 861843 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1117048 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1639403 10681310 ~ 10682664 (+)
G293528 NA other downstream 1976499 11018406 ~ 11024973 (+)

Expression


Co-expression Network