si:dkeyp-72h1.1 (LOC108257513,LOC108411900)


Basic Information

Item Value
gene id si:dkeyp-72h1.1
gene name LOC108257513,LOC108411900
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6797339 ~ 6807341 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944379.2
actatacacacactcgcacaccacatacacacgcacacacacatgcacgcgcgCCTCCTGTCATTCTGTAATCACAGACACTCGCGGACGCTCAGGATCTGTGCGCCTCTATGTGaagtttgtacacacacacaccagagagaagaagaaaaaatccCTCTTCCTTCATCTCCTTCAGGCGATTAACATCAGTCTGCTGAGCAGGCTCGGAGAAAAGAGGtcacttttacagttttaccGCAGCACACAGGCCTGAGCTGCAGGACATTATGACAGAAGTAATGAACACCTGTGAATCGACCGTGGGGGACTACAGTGCATCTGGAGACCAGAAGATCGGTTTTCAGATTTTCCCAGAATCACATGAGCGATACCCCAAGCTATCCAAGCGCTTGCCGTCCATCGTGGTGGAGCCCACTGAGACTGGAGAAGTGGAGAGTGGGGAGTTGCGATGGCCTCCCGATGACTTGAGCCCTACAGATGAAACCAGAGATCCTCCAGCCCAGAAAGCAGgtGAGGATCCGAcagcagaggaggaggaagctGGTAGAGTTGCAGCGAACTGATGAGCACTGACTGGCACCAATCCAACCTATAACTATGAATGTCTTAATGATGGACAAGAATGAGCAGGAGGCTCCTACAGTTAGGTCTGACTACAGTATCACCCGCAATAGAGCCACCCACCTGTTGATAGACCTTCCAATCCAGTAGGGGGAGCTGAGGCCTGAGAGACTTTCCTGAAATAACTTGCGTGCCAAACTCTAGTGGTAGCCAGCTACTGTGAATGAGTTGTACCTTCTTTCCCATAACATTATGATTCATATAtaattctaatattaatttgttaatttgtaCCTGTTTTTAAGTGATTTACTGgaattgtacacacacacacacacacacagatatatatatatatatatatgctttgGACcaaagttaaatattaaatataacttaaATATTTGACCCTATTGATCTACCACACACATATCTACAAATCTTCTAATTTCAAACAATGTGGATGTATAGTTTATCTGCACTAGATGTTCTTAACAAATATATACGACCTTCGAAATGTACAGtagattatattttatagtgtGTTCTCatatattcagttcaatttaaaGCAGCTATTCATTAAAGTAGTGCTCAAGTCTGAAAGCAGCTGCCTTAGTAACTGTATCCTCACTTGGCTGTATTTTAATCAGAAAGGAAACTTGGCAGGCATCTGGTTCAGAATGTCGTTCAGTATCATAATACATAATTAGTGTTCTCTGGATaacagctagctggctaactgaGCTAGATAAAAGTTATCATAATGTAGCTACAAAAACTGAGGCTGCatcatgttagctagttagttttTAACTACAGAACAACTTCTGAAATGCTCTGAGCACAAATGACTGTTATATCTGTTAAAGCAGAACCGTAAATTAATGTTAACTATCTTAATACAACAATTcacttacatttgtaaatatatttcttcATTGAATTGACAGTTTGGTCCATCATGCCTTCTGTCCATCATGTCCTCTGAACAATATTATGGAATTGCTtgcattggggaaaaaaagcatgctGCATTGCCTTCAAATCTGGCCAAAATAAGTCACCTTAGTGGACAGCTGCCATAGGACAGTGTTTATCTATAGCGCATGCTAATGTTGCCCAAAATTATTGTGTATGTCTAGGGAGCAGCTTTCTGGTTGGATCACAAAGAAACCAAACCTGTACGtgttgcttgcttttttttttttttttttttttaattattattattatttcttctgtCTAGCAGATTAcctcttctgcttctgcttgtGTTTCTGTTGTTAGAGTAACCATCTACATACACaaagatgttgtttttttatatgtcGTACCTCATTGCATGTGTATAACTGCATTTATCTAAATAATTCTAATTCAATAATTCAAATTTTTTAACCCACAGTCACAAGAACCATCCTTCAAGGAgcaaaaaactcaaaataatcTATCTAGGTGATATGCCAGGAATGTCCAGTTAgtgtaaaaacattaaaaaaatacaaccaaA

Function

NR:

description
PREDICTED: protein LBH-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944379.2 True 2077 mRNA 0.39 4 6797339 6807341

Neighbor

gene id symbol gene type direction distance location
LOC113545329 LOC108257524 coding upstream 97522 6691634 ~ 6699817 (+)
taf4b LOC108258144 coding upstream 120985 6661880 ~ 6676354 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding upstream 136755 6640967 ~ 6660584 (+)
aqp4 LOC108257544,LOC108414838 coding upstream 167365 6622927 ~ 6629974 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding upstream 293208 6461728 ~ 6504131 (+)
tnfaip2a NA coding downstream 26045 6833386 ~ 6848533 (+)
LOC113545215 NA coding downstream 43015 6850356 ~ 6868031 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding downstream 76962 6884303 ~ 6893353 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding downstream 98180 6905521 ~ 6911188 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 179768 6987109 ~ 7003630 (+)
G290935 NA non-coding upstream 69825 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 374373 6422672 ~ 6422966 (+)
G290863 NA non-coding upstream 454799 6342263 ~ 6342540 (+)
G290699 NA non-coding upstream 559423 6237714 ~ 6237916 (+)
LOC117599801 NA non-coding upstream 978273 5815902 ~ 5819066 (+)
G291037 NA non-coding downstream 27066 6834407 ~ 6834698 (+)
LOC117599731 NA non-coding downstream 123028 6930369 ~ 6933860 (+)
G291058 LOC103367973 non-coding downstream 131850 6939191 ~ 6939619 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding downstream 174622 6981963 ~ 6982804 (+)
G291109 NA non-coding downstream 251042 7058383 ~ 7058583 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 637299 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 995646 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1817939 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2187738 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2459040 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 205401 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 970256 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1236045 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1681306 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2186172 8993513 ~ 8996996 (+)

Expression


Co-expression Network