chgb (LOC108258019)


Basic Information

Item Value
gene id chgb
gene name LOC108258019
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8987232 ~ 8990529 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944403.2
ATGAATATTATATATCTGCGGTGTTTGAGCGCTATTCACGGATATAAAACGGGCTGCTTCACGGGCGCTTCACCGGGCCGTGACGCAGGTCTCGCAGACTCCGCCCACTCGCGCGGAGTCCTGATCGTTCCTGCGTTGCTCCAACATAACGCGTCTCGCGCGCGCTGTGGTGCAGGCAGGAGCTCGGCTTTTTGGCTCTTTGATATTTCAGATCCGAGCTTTCATTACCGTTGCAGAACAGTTTTTATCATGAAgcttctgtctctgtttgtcgTGACTTTGTCCCTCTTGGCAGAAAGCAAGTCTTCACCACTGGGGCAAGATGGCAGGAAGGAAGACCTGCTCATCCAGTGTTTGGTTGAGGTACTTACTAAGGTAGTGTCCCAACCAGATGGCACTTCTCTGCAACCAGAATGTAAAGACATTCTTCAAAAGCAAGGTTCCAGCCACACTTTGCTTATGAAAAAGAATGAAGAAGAAATGCTTCCTCTAGAGCAAGATGAGAAAAGACAAGAAAGGGAATCTAAAGCCAGGGCACAAGAAATCATTAATGAACTTCTCAAGACAAATGAGGAAAAGCGTGAAGACATGGATGAAGAACGGAGCCAGGAAGAATTTCCAAATTACTATAAAAGACACCATCTTTTAACAAGCAAAGAAAAACGTGAAGACCCAGACAATGAGAGGAGCCAAGAGGAATTCCCTCAAAAAAGACACAGTTTACTTTCCACAAAGGAGAAGCGTGAGGATCAAGATGAAGAGCAAAGTCAAGAAGAATTTCCGACTTATGAGCAGAAAAGGCACCTTTTCTTGACCAGCAAGGAAAAGCGTGATGATCCCGACTATGATCGAAGCCAGGTAGACTTCCCAAGCTATGTTTATAAAAGGTATCATGATGAAGACGGGGGGACAGAGAAGCAAATTTGGAAACCtcacaaataccattacaaacggTATGATGACTCATCAAATGAAGATTTTGCAGAACTAAACTCTCAAGAGAAGAGGTTTGAAGAAGATGAGAGTGCTAAACAATACTGGAATCCCATTCAACGATACCACCACAAGAAACACCACAAACATGATGGTGATTCCTCTGATGAAGAAATGGAGagtgaggagaaagagaagagggTCTCATGGACCAGAGAGTCAGAGGAGGGGTCCGAGGAAAGTGAAGAGAGGGAAAAACGAGTTTGGAAGCCAAGCTATAAGAACCACCACATGAAACTCTTTCACAAGCAGGGTAAAtttgagaatgaaaatgatgcaaaCCTCCATCACTCACTGGAGACTTCCAAGCGCCGTTCCcctgaggaagaagaggaagaactAATTGCCCAAGAGCTAAATGAAAACAAGCACCATTACGACAGCCAAGAGCAGCAGAAAAGGCACCACAGTGATGCCGAAGAAAAGAAGCAGGAGAAAGAGGCAGAGCTGAGATACCTGACCAAGAAAAGAAATGAGCTGGAAGAACGTCTGCTGAAAGAGGGTGAGGTTTATGACAAGCGCAATCCCTGGATTTACCGAGGATACTATCATCCAGCCTGGTATAAGCGGATTGCCGAGGGAAACGAAGGTCTTGTGGGTCCCTCAAAGAAACTTGAAGAGCTTGTTAATGCCCTCAGATACAAGATTGGTCTACTGTCTGAAAAAGAGCCAACTGAAGGGGAAAAGGCTTACCTCCACCAGAGGGCTCTTACTCCAGAAGAGctGAAAGAACTTGAGAAACTTGCCTTTGTGGAGCAACAAGCACAAATAAACTAGCCTTGGTTGAACGAGAAGTGAAGCACCCATACAAGAAACACCTGACACCCCCCTTATTATGACTTTC

Function

NR:

description
PREDICTED: secretogranin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944403.2 True 1837 mRNA 0.45 5 8987232 8990529

Neighbor

gene id symbol gene type direction distance location
gzf1 gzf1 coding upstream 40231 8940392 ~ 8947001 (+)
trnak-uuu_18 NA coding upstream 95492 8891668 ~ 8891740 (+)
atad2b atad2b,LOC107603081 coding upstream 282247 8636450 ~ 8704985 (+)
wdcp wdcp coding upstream 381249 8600411 ~ 8605983 (+)
LOC113545337 LOC108257647 coding upstream 429487 8549942 ~ 8557745 (+)
bmp2b LOC108258023 coding downstream 46582 9037111 ~ 9041907 (+)
LOC113545235 plcb4,LOC108258041 coding downstream 192903 9183432 ~ 9255249 (+)
lamp5 lamp5,LOC107704368 coding downstream 267865 9258394 ~ 9264851 (+)
LOC113545201 LOC108411733,LOC108258090,LOC107712204,LOC107564327,LOC107659822,LOC107712203 coding downstream 346263 9336792 ~ 9338360 (+)
LOC113545203 NA coding downstream 394352 9384881 ~ 9385795 (+)
G292102 NA non-coding upstream 281988 8705054 ~ 8705244 (+)
G292074 NA non-coding upstream 401330 8584219 ~ 8585902 (+)
G292072 NA non-coding upstream 403755 8582950 ~ 8583477 (+)
G291996 NA non-coding upstream 476456 8510569 ~ 8510776 (+)
G291976 runx2b,LOC108258149,LOC107678859,LOC107726745,LOC107603075 non-coding upstream 513504 8470947 ~ 8473728 (+)
G292654 NA non-coding downstream 417963 9408492 ~ 9408714 (+)
G292643 NA non-coding downstream 424022 9414551 ~ 9415576 (+)
G292765 NA non-coding downstream 563908 9554437 ~ 9554807 (+)
G292771 NA non-coding downstream 597171 9587700 ~ 9587903 (+)
G292756 NA non-coding downstream 621459 9611988 ~ 9612612 (+)
LOC113545369 NA other upstream 452732 8488647 ~ 8534500 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other upstream 912788 8043386 ~ 8074444 (+)
atp5mpl NA other upstream 1205224 7777597 ~ 7782008 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 1967546 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 2827192 6135920 ~ 6160040 (+)
G292216 trmt6 other downstream 2984 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 83499 9074028 ~ 9179173 (+)
G293016 ileu other downstream 913221 9903750 ~ 9950731 (+)
LOC117599798 NA other downstream 1168426 10158955 ~ 10170739 (+)
LOC117599733 NA other downstream 1690781 10681310 ~ 10682664 (+)

Expression


Co-expression Network